miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 195611 0.79 0.131365
Target:  5'- cGCGCUGGCGU--CCGGCccaaACGGCCGGc -3'
miRNA:   3'- -CGCGACCGCGcuGGCCG----UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 192661 0.67 0.624231
Target:  5'- cGCGCUcGCGCGACuCGaaGCGcCGGCCGc- -3'
miRNA:   3'- -CGCGAcCGCGCUG-GC--CGU-GUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 192402 0.69 0.509435
Target:  5'- cGCGCcGGgguagucgaaacgcCGCGACgGGUccGCGGCCGGc -3'
miRNA:   3'- -CGCGaCC--------------GCGCUGgCCG--UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 192133 0.67 0.586307
Target:  5'- uGCuGCUGuuGCuGCuGCCGGCGCGGUCGcGGc -3'
miRNA:   3'- -CG-CGAC--CG-CGcUGGCCGUGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 191890 0.74 0.275352
Target:  5'- gGCGgaGGCGgGAUCGGCACcgGGaCCGGc -3'
miRNA:   3'- -CGCgaCCGCgCUGGCCGUG--UC-GGCCc -5'
11002 5' -63.3 NC_002794.1 + 191520 0.71 0.370297
Target:  5'- aGCGCcgGGCGuCGGCCcGCgccucccgccGCAGUCGGGu -3'
miRNA:   3'- -CGCGa-CCGC-GCUGGcCG----------UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 190991 0.69 0.488848
Target:  5'- aGCGCggcgacGGCGUcgcgaucggccguucGAUCGGCACguucAGCCGGa -3'
miRNA:   3'- -CGCGa-----CCGCG---------------CUGGCCGUG----UCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 190200 0.67 0.595759
Target:  5'- cGCGCUccaGCG-CCGcGCGCAcccGCCGGGc -3'
miRNA:   3'- -CGCGAccgCGCuGGC-CGUGU---CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 189815 0.68 0.539581
Target:  5'- -gGCgGGCGCGccacgaucaACCGcCACAGCgGGGu -3'
miRNA:   3'- cgCGaCCGCGC---------UGGCcGUGUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 189662 0.72 0.320197
Target:  5'- -gGCUGGC-CGAgCGGuCGCcccGGCCGGGa -3'
miRNA:   3'- cgCGACCGcGCUgGCC-GUG---UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 188347 0.7 0.442145
Target:  5'- gGCGCcgucGCGCccguccGGCCGGCgGCGGCCGaGGg -3'
miRNA:   3'- -CGCGac--CGCG------CUGGCCG-UGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 187824 0.67 0.605234
Target:  5'- aGCGgaGcGCGCucGGCuCGGCGC-GCCGaGGg -3'
miRNA:   3'- -CGCgaC-CGCG--CUG-GCCGUGuCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 187460 0.75 0.235673
Target:  5'- cCGCUcGGCGUcGCuCGGCGCGcGCCGGGc -3'
miRNA:   3'- cGCGA-CCGCGcUG-GCCGUGU-CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 186851 0.73 0.281438
Target:  5'- cGCGCgGGCGCuGCCGuGCAgCAGCagCGGGc -3'
miRNA:   3'- -CGCGaCCGCGcUGGC-CGU-GUCG--GCCC- -5'
11002 5' -63.3 NC_002794.1 + 186276 0.74 0.274749
Target:  5'- cGC-CUGGCGCGGCggcaccgCGGCcagGCGGCCGGu -3'
miRNA:   3'- -CGcGACCGCGCUG-------GCCG---UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 185762 0.72 0.331882
Target:  5'- cCGCcGGCGCGGCCgcccgucacacgucGGC-CGGCgCGGGg -3'
miRNA:   3'- cGCGaCCGCGCUGG--------------CCGuGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 185176 0.81 0.098119
Target:  5'- gGCGC-GGCGCGGUCGGCGCGGUCGGc -3'
miRNA:   3'- -CGCGaCCGCGCUGGCCGUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 184948 0.67 0.605234
Target:  5'- cGCaGCUGcGC-CGGCCcGCGCAGCCGc- -3'
miRNA:   3'- -CG-CGAC-CGcGCUGGcCGUGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 184578 0.71 0.370297
Target:  5'- cCGCggcGGCgGCGGCCacGCGCGGCCGcGGg -3'
miRNA:   3'- cGCGa--CCG-CGCUGGc-CGUGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 184505 0.72 0.341028
Target:  5'- cGgGC-GGCGCGGgccCCGcGCGCGGCgCGGGc -3'
miRNA:   3'- -CgCGaCCGCGCU---GGC-CGUGUCG-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.