miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 146368 0.66 0.925226
Target:  5'- cCGGGUAGCcGuCCGCuCGUc-CAGACa -3'
miRNA:   3'- aGUCCAUCGaC-GGCG-GCAucGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 118974 0.66 0.925226
Target:  5'- gUCAGGUGGCggaGCaCGuCCGggcgcgGGgAGACg -3'
miRNA:   3'- -AGUCCAUCGa--CG-GC-GGCa-----UCgUCUGg -5'
11003 3' -56.8 NC_002794.1 + 112238 0.66 0.925226
Target:  5'- cCAGGgccgccGCgaacGCCGCCGgcG-GGACCg -3'
miRNA:   3'- aGUCCau----CGa---CGGCGGCauCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 69516 0.66 0.925226
Target:  5'- gUCAGGUacGGCgcgUGCacgagaGCCG-AGUAGACg -3'
miRNA:   3'- -AGUCCA--UCG---ACGg-----CGGCaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 67027 0.66 0.925226
Target:  5'- gCGGccGGCUcCCGCCGcgucGCGGACCc -3'
miRNA:   3'- aGUCcaUCGAcGGCGGCau--CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 49437 0.66 0.924696
Target:  5'- aCGGcGUccGGCgcggucGUCGCCGUGGCGccgccguGACCg -3'
miRNA:   3'- aGUC-CA--UCGa-----CGGCGGCAUCGU-------CUGG- -5'
11003 3' -56.8 NC_002794.1 + 99930 0.66 0.919815
Target:  5'- gCGGcGUGGUcuUGCgGCUGUucGGCcGGACCg -3'
miRNA:   3'- aGUC-CAUCG--ACGgCGGCA--UCG-UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 91464 0.66 0.919815
Target:  5'- cCAGa-AGCUGaCGCCGggcgAGCGcGACCa -3'
miRNA:   3'- aGUCcaUCGACgGCGGCa---UCGU-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 122644 0.66 0.919815
Target:  5'- --cGGUGGacgugaucuacCUGCUGgCGgcGCAGGCCc -3'
miRNA:   3'- aguCCAUC-----------GACGGCgGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 104755 0.66 0.919815
Target:  5'- cUCGuGGUAGCggucgGcCCGCCGgcGCuccGACa -3'
miRNA:   3'- -AGU-CCAUCGa----C-GGCGGCauCGu--CUGg -5'
11003 3' -56.8 NC_002794.1 + 92605 0.66 0.919815
Target:  5'- --cGGUGGCcuucucGCCGCUGcUGGCGcACCa -3'
miRNA:   3'- aguCCAUCGa-----CGGCGGC-AUCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 186955 0.66 0.919261
Target:  5'- cCGGGccGCUgGCCGCCGccuccAGCAGcgcgcgcACCa -3'
miRNA:   3'- aGUCCauCGA-CGGCGGCa----UCGUC-------UGG- -5'
11003 3' -56.8 NC_002794.1 + 47116 0.66 0.919261
Target:  5'- -gAGGUGgaguuccGCUGCCGCCGacucuucGGcCGGACg -3'
miRNA:   3'- agUCCAU-------CGACGGCGGCa------UC-GUCUGg -5'
11003 3' -56.8 NC_002794.1 + 115298 0.66 0.916458
Target:  5'- aCGGGgaccGCUgcGCCGCCGUccgcacggucgccgcGGCguccGGGCCg -3'
miRNA:   3'- aGUCCau--CGA--CGGCGGCA---------------UCG----UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 138910 0.66 0.914174
Target:  5'- aUCAGGU-GCUGaCCGC---GGCGGAUg -3'
miRNA:   3'- -AGUCCAuCGAC-GGCGgcaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 142982 0.66 0.914174
Target:  5'- -gAGG-GGCUGCgugccCGCCGUGGCcaGGAaCCc -3'
miRNA:   3'- agUCCaUCGACG-----GCGGCAUCG--UCU-GG- -5'
11003 3' -56.8 NC_002794.1 + 146175 0.66 0.914174
Target:  5'- aUCAGG-AGCgcuucgagGCCGa-GgcGCGGGCCu -3'
miRNA:   3'- -AGUCCaUCGa-------CGGCggCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 130591 0.66 0.908303
Target:  5'- gUCGGGcAGCgcuauCCGCCGaucGUGGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 96913 0.66 0.908303
Target:  5'- -gAGGUGGCggaGgCGCCGgcgacAGCAcGCCg -3'
miRNA:   3'- agUCCAUCGa--CgGCGGCa----UCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 50595 0.66 0.908303
Target:  5'- -uGGGUGGCcGgCGCCG-GGgGGAUCg -3'
miRNA:   3'- agUCCAUCGaCgGCGGCaUCgUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.