Results 41 - 60 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 48639 | 0.67 | 0.861026 |
Target: 5'- gUCGGGgcccGCgaGCCGCCGcAGacuCAGGCCc -3' miRNA: 3'- -AGUCCau--CGa-CGGCGGCaUC---GUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 95830 | 0.67 | 0.853437 |
Target: 5'- cCGGGggAGCggcggcgGCgGCCGgggaggcggcgGGCGGGCCg -3' miRNA: 3'- aGUCCa-UCGa------CGgCGGCa----------UCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 66821 | 0.67 | 0.859524 |
Target: 5'- gUCAGGgcgcccGGCgcgacuccgggcGCCGCCGUcggcgcGGCgAGGCCg -3' miRNA: 3'- -AGUCCa-----UCGa-----------CGGCGGCA------UCG-UCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 56311 | 0.67 | 0.853437 |
Target: 5'- gUCGcGGUcGCUgGCgGCCGUGGCcGGCg -3' miRNA: 3'- -AGU-CCAuCGA-CGgCGGCAUCGuCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 116883 | 0.67 | 0.853437 |
Target: 5'- gUCAGGggGGCgccGgCGCCGUcuccGGCGG-CCg -3' miRNA: 3'- -AGUCCa-UCGa--CgGCGGCA----UCGUCuGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 43639 | 0.67 | 0.853437 |
Target: 5'- gCuGGUGgaacacGCUGCCGCCGaacgAGcCGGGCUc -3' miRNA: 3'- aGuCCAU------CGACGGCGGCa---UC-GUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 71230 | 0.67 | 0.868417 |
Target: 5'- cCGcGUAGUgGCgGCCGgcGUGGACCg -3' miRNA: 3'- aGUcCAUCGaCGgCGGCauCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 101206 | 0.67 | 0.868417 |
Target: 5'- -gAGGaGGCgGCCGCCc-GGCAGAUg -3' miRNA: 3'- agUCCaUCGaCGGCGGcaUCGUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 112062 | 0.67 | 0.875603 |
Target: 5'- cUCGGGcgccAGCUGCaGCCGagucAGCAGGuCCc -3' miRNA: 3'- -AGUCCa---UCGACGgCGGCa---UCGUCU-GG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 148130 | 0.67 | 0.889341 |
Target: 5'- gUCGGGc-GCgggGCCGCCGgGGCgaGGGCg -3' miRNA: 3'- -AGUCCauCGa--CGGCGGCaUCG--UCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 190757 | 0.67 | 0.889341 |
Target: 5'- aCGGGggcGGCgGCCGCgCGUcccGGUAGAUg -3' miRNA: 3'- aGUCCa--UCGaCGGCG-GCA---UCGUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 127362 | 0.67 | 0.889341 |
Target: 5'- gCGGcGgcGCgGCCGCuCGUgucGGCGGACg -3' miRNA: 3'- aGUC-CauCGaCGGCG-GCA---UCGUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 115917 | 0.67 | 0.889341 |
Target: 5'- -gGGGUGGacuUGgCGCgGcGGCGGGCCg -3' miRNA: 3'- agUCCAUCg--ACgGCGgCaUCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 90944 | 0.67 | 0.889341 |
Target: 5'- -uGGGcgGGCUGUgCGCCGaGGCccGGGCCc -3' miRNA: 3'- agUCCa-UCGACG-GCGGCaUCG--UCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 158746 | 0.67 | 0.882579 |
Target: 5'- cCGGGUAGUgUGCgCGCaCGUGGU-GAUCg -3' miRNA: 3'- aGUCCAUCG-ACG-GCG-GCAUCGuCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 72743 | 0.67 | 0.889341 |
Target: 5'- cUCccGcGGCgGCCGCCGaccgAGCGGAUCu -3' miRNA: 3'- -AGucCaUCGaCGGCGGCa---UCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 185353 | 0.67 | 0.875603 |
Target: 5'- ------cGC-GCCGCCGcgAGCGGGCCg -3' miRNA: 3'- aguccauCGaCGGCGGCa-UCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 13785 | 0.67 | 0.875603 |
Target: 5'- cCGGGUGGCUcCgGCCGUcuucgcgacgGGCccGGCCg -3' miRNA: 3'- aGUCCAUCGAcGgCGGCA----------UCGu-CUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 36013 | 0.67 | 0.882579 |
Target: 5'- cUCGGGcGGCggaauCCGCCGUccGGCccGGCCg -3' miRNA: 3'- -AGUCCaUCGac---GGCGGCA--UCGu-CUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 37363 | 0.68 | 0.845654 |
Target: 5'- cCAGGUAGUcGaaGCUcgGgcGCAGGCCg -3' miRNA: 3'- aGUCCAUCGaCggCGG--CauCGUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home