miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 34235 0.8 0.234523
Target:  5'- gCAGGagcugcacgcgcGGCUGCCGCCGcaGGCGGACCg -3'
miRNA:   3'- aGUCCa-----------UCGACGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 80416 0.77 0.363342
Target:  5'- cCAGGUGGCgccgggcgggGCCGCCGccGGCGGccGCCg -3'
miRNA:   3'- aGUCCAUCGa---------CGGCGGCa-UCGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 105427 0.77 0.371252
Target:  5'- -aGGGUGGCcGCCGCCGcgccGGCGGcGCCg -3'
miRNA:   3'- agUCCAUCGaCGGCGGCa---UCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 113374 0.76 0.412528
Target:  5'- aCGGGU-GCggGCCGCCGUcguGCAGGCg -3'
miRNA:   3'- aGUCCAuCGa-CGGCGGCAu--CGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 14565 0.74 0.502914
Target:  5'- gCGGGaGGCgagccgGCCGaCCGaAGCGGGCCg -3'
miRNA:   3'- aGUCCaUCGa-----CGGC-GGCaUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 48472 0.74 0.522045
Target:  5'- gUCAGGgcGaaGCCGCCG-GGCAGcGCCc -3'
miRNA:   3'- -AGUCCauCgaCGGCGGCaUCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 143391 0.73 0.531716
Target:  5'- -aGGGUcAGCUGCUGCucgacCGgcGCGGGCCg -3'
miRNA:   3'- agUCCA-UCGACGGCG-----GCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 74095 0.73 0.531716
Target:  5'- gUCGGGacAGCUGCgGCUGcucacccucgAGCAGGCCg -3'
miRNA:   3'- -AGUCCa-UCGACGgCGGCa---------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 110428 0.73 0.531716
Target:  5'- cCGGGcGGCUGUCGUCGUcgguGGCggAGGCCg -3'
miRNA:   3'- aGUCCaUCGACGGCGGCA----UCG--UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 117995 0.73 0.541451
Target:  5'- gCAGG-GGCUGCCGCgGcaggagcaccUGGCAGGCg -3'
miRNA:   3'- aGUCCaUCGACGGCGgC----------AUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 104396 0.73 0.551244
Target:  5'- gUCAGGUGGUcGuCCGCCGcGGCcucGGCCu -3'
miRNA:   3'- -AGUCCAUCGaC-GGCGGCaUCGu--CUGG- -5'
11003 3' -56.8 NC_002794.1 + 143682 0.72 0.589895
Target:  5'- gUCAGG-AGCUGCCGCagggucgCGUugcccaccGCGGGCCc -3'
miRNA:   3'- -AGUCCaUCGACGGCG-------GCAu-------CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 117426 0.72 0.600894
Target:  5'- gCAGG-AGCUGCCGCgaggCGUuGCGGAUg -3'
miRNA:   3'- aGUCCaUCGACGGCG----GCAuCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 41841 0.72 0.620955
Target:  5'- gUCGGGUcgaucagcAGCcccagGCCGCCG-GGCAGgGCCg -3'
miRNA:   3'- -AGUCCA--------UCGa----CGGCGGCaUCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 122974 0.72 0.620955
Target:  5'- -gGGGUGGCUGUacgcgCGCCugguGCGGGCCg -3'
miRNA:   3'- agUCCAUCGACG-----GCGGcau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 29923 0.72 0.631001
Target:  5'- aCGGGcAGCgacgaGCCGCCGUccgggaAGCGGcACCu -3'
miRNA:   3'- aGUCCaUCGa----CGGCGGCA------UCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 70228 0.72 0.631001
Target:  5'- gUCGGGcgGGCggccgGCCGCCccgcAGCAGACg -3'
miRNA:   3'- -AGUCCa-UCGa----CGGCGGca--UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 48857 0.72 0.635021
Target:  5'- gCAGGgcGCgauaguccccgucgGCgGCCagGUGGCAGGCCa -3'
miRNA:   3'- aGUCCauCGa-------------CGgCGG--CAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 129256 0.71 0.651089
Target:  5'- cUCGGGUcgAGC-GCCucGUCGUgAGCGGGCCg -3'
miRNA:   3'- -AGUCCA--UCGaCGG--CGGCA-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 188556 0.71 0.681091
Target:  5'- gCGGGUAcuGCUGCCGCaCGU-GCcGACa -3'
miRNA:   3'- aGUCCAU--CGACGGCG-GCAuCGuCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.