miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 71057 0.71 0.691025
Target:  5'- --cGGaAGCcGCCGCCGcAGCAGccGCCg -3'
miRNA:   3'- aguCCaUCGaCGGCGGCaUCGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 33579 0.71 0.691025
Target:  5'- cCAGGUGGUgGaCCGCCuGcGGCGGACg -3'
miRNA:   3'- aGUCCAUCGaC-GGCGG-CaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 81413 0.7 0.710743
Target:  5'- cUCGGG-AGCUGCuCGCCc-GGCuucgAGACCg -3'
miRNA:   3'- -AGUCCaUCGACG-GCGGcaUCG----UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 185473 0.7 0.710743
Target:  5'- gCGGGcGGCgGCCGCgGcgAGgGGACCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGgCa-UCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 35504 0.7 0.720509
Target:  5'- gCAGGUGGUgGCCGCCGUgcccAGCGucuacauccuGcACCg -3'
miRNA:   3'- aGUCCAUCGaCGGCGGCA----UCGU----------C-UGG- -5'
11003 3' -56.8 NC_002794.1 + 114451 0.7 0.730203
Target:  5'- gUCGuGGU-GCUGUCGCCGcAGCcgcaggAGACCc -3'
miRNA:   3'- -AGU-CCAuCGACGGCGGCaUCG------UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 151583 0.7 0.730203
Target:  5'- cCGGcGgcGCgcGCCGCCGccGCGGGCCc -3'
miRNA:   3'- aGUC-CauCGa-CGGCGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 114363 0.7 0.739815
Target:  5'- cCAGGgccGGCUGCaggGCCGc-GUAGGCCu -3'
miRNA:   3'- aGUCCa--UCGACGg--CGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 142719 0.7 0.739815
Target:  5'- --uGGUGGUggggGUCGCgGUAacGCAGGCCg -3'
miRNA:   3'- aguCCAUCGa---CGGCGgCAU--CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 42595 0.7 0.749336
Target:  5'- -gAGGgcGCgGCgGCCGggAGCGGGCUc -3'
miRNA:   3'- agUCCauCGaCGgCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 101117 0.7 0.749336
Target:  5'- -----aGGCcGCCGCCGUGGCGcGCCu -3'
miRNA:   3'- aguccaUCGaCGGCGGCAUCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 185060 0.69 0.757821
Target:  5'- --uGGUcugcagccgccgcGGCccGUCGCCGUAGCAGGCg -3'
miRNA:   3'- aguCCA-------------UCGa-CGGCGGCAUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 92556 0.69 0.758758
Target:  5'- -gAGGUGGCcGgCGCCac-GCAGGCCu -3'
miRNA:   3'- agUCCAUCGaCgGCGGcauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 102192 0.69 0.758758
Target:  5'- -gAGGaccUGGCgGCCGCCGUGacGgAGGCCc -3'
miRNA:   3'- agUCC---AUCGaCGGCGGCAU--CgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 142308 0.69 0.758758
Target:  5'- aCAGGUGGCggaGgCGgCGgcGCAGGCg -3'
miRNA:   3'- aGUCCAUCGa--CgGCgGCauCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 88960 0.69 0.768072
Target:  5'- cUCGGuacgAGCgugGCCGCCGgaucgucgcGGCAGAUCg -3'
miRNA:   3'- -AGUCca--UCGa--CGGCGGCa--------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 91115 0.69 0.768072
Target:  5'- cCGGGcAGCUGgUGCCGUGcguggaggaggcGCGGACg -3'
miRNA:   3'- aGUCCaUCGACgGCGGCAU------------CGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 113922 0.69 0.786342
Target:  5'- cCAGGUcg--GCCGCCGaGGCgacGGGCCg -3'
miRNA:   3'- aGUCCAucgaCGGCGGCaUCG---UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 149515 0.69 0.786342
Target:  5'- aCGGG--GUcGUCGCCGggAGCGGACCu -3'
miRNA:   3'- aGUCCauCGaCGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 77011 0.69 0.79528
Target:  5'- cCGGGa---UGCCGCCGgcGCAccucGACCg -3'
miRNA:   3'- aGUCCaucgACGGCGGCauCGU----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.