Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 141668 | 0.69 | 0.79528 |
Target: 5'- gCGGGUcgAGCgaagacggGUCGCCGUAcGCGGuCCc -3' miRNA: 3'- aGUCCA--UCGa-------CGGCGGCAU-CGUCuGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 77011 | 0.69 | 0.79528 |
Target: 5'- cCGGGa---UGCCGCCGgcGCAccucGACCg -3' miRNA: 3'- aGUCCaucgACGGCGGCauCGU----CUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 65232 | 0.69 | 0.79528 |
Target: 5'- aCGGGcGGCgGUCGCCGcGGCGGcgauCCg -3' miRNA: 3'- aGUCCaUCGaCGGCGGCaUCGUCu---GG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 91876 | 0.69 | 0.79528 |
Target: 5'- -gGGGUGGCggcgGCgGCCGcgacgAGCAGuucacGCCg -3' miRNA: 3'- agUCCAUCGa---CGgCGGCa----UCGUC-----UGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 43072 | 0.69 | 0.79528 |
Target: 5'- aCAGGgcGUUcucGCaGCUGUAGCGGACg -3' miRNA: 3'- aGUCCauCGA---CGgCGGCAUCGUCUGg -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 37770 | 0.69 | 0.79528 |
Target: 5'- gCGGG-AGCgGCCGUCGUcGUcGGCCg -3' miRNA: 3'- aGUCCaUCGaCGGCGGCAuCGuCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 111613 | 0.69 | 0.804077 |
Target: 5'- cCAGGccGGCgggGCCGCCGcGGCc-GCCg -3' miRNA: 3'- aGUCCa-UCGa--CGGCGGCaUCGucUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 36777 | 0.69 | 0.804077 |
Target: 5'- cCAGcuGUAGCcgGCCGCCGU-GUAcGCCg -3' miRNA: 3'- aGUC--CAUCGa-CGGCGGCAuCGUcUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 101942 | 0.69 | 0.804077 |
Target: 5'- cCAGGgcauGCUGCCcugccugcCCGUGGCGGcguCCa -3' miRNA: 3'- aGUCCau--CGACGGc-------GGCAUCGUCu--GG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 134909 | 0.69 | 0.804077 |
Target: 5'- cUCGGGUGaaaCUuuucGCCGCCG-GGCGGACg -3' miRNA: 3'- -AGUCCAUc--GA----CGGCGGCaUCGUCUGg -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 182016 | 0.68 | 0.812723 |
Target: 5'- cCGGGaccccGGCguccggGCCGCCGgcGacCAGACCa -3' miRNA: 3'- aGUCCa----UCGa-----CGGCGGCauC--GUCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 102686 | 0.68 | 0.816138 |
Target: 5'- cCGGGUgucguacgugcugacGGCcggGCCGCCGgacgGGCGcGCCa -3' miRNA: 3'- aGUCCA---------------UCGa--CGGCGGCa---UCGUcUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 105377 | 0.68 | 0.821212 |
Target: 5'- gCAGGUccgacAGCUcgagcuguucgGCCGCCGc-GCGGAUCu -3' miRNA: 3'- aGUCCA-----UCGA-----------CGGCGGCauCGUCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 105263 | 0.68 | 0.829534 |
Target: 5'- aCAGGaGGCUGuaGUCG-AGCAG-CCa -3' miRNA: 3'- aGUCCaUCGACggCGGCaUCGUCuGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 91055 | 0.68 | 0.837684 |
Target: 5'- aCGGGgcGCgcgucgucaUGUaCGCCGUGGUGGGCUa -3' miRNA: 3'- aGUCCauCG---------ACG-GCGGCAUCGUCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 182761 | 0.68 | 0.837684 |
Target: 5'- aCAGGUAGCaGCCGCaCGcc-CGGuCCa -3' miRNA: 3'- aGUCCAUCGaCGGCG-GCaucGUCuGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 24084 | 0.68 | 0.845654 |
Target: 5'- cCGGGcgGGC-GUCGCCGUAuuaaAGACCg -3' miRNA: 3'- aGUCCa-UCGaCGGCGGCAUcg--UCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 91151 | 0.68 | 0.845654 |
Target: 5'- --cGGU-GCUGCugggCGCCGUGG-AGGCCu -3' miRNA: 3'- aguCCAuCGACG----GCGGCAUCgUCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 49519 | 0.68 | 0.845654 |
Target: 5'- cCGGGUacaugGGUUcGCgCGCCGcgAGCAGAUCc -3' miRNA: 3'- aGUCCA-----UCGA-CG-GCGGCa-UCGUCUGG- -5' |
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11003 | 3' | -56.8 | NC_002794.1 | + | 145261 | 0.68 | 0.845654 |
Target: 5'- aUCGcGaAGCgGUuauUGCCGUGGCAGGCCu -3' miRNA: 3'- -AGUcCaUCGaCG---GCGGCAUCGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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