miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 96913 0.66 0.908303
Target:  5'- -gAGGUGGCggaGgCGCCGgcgacAGCAcGCCg -3'
miRNA:   3'- agUCCAUCGa--CgGCGGCa----UCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 130591 0.66 0.908303
Target:  5'- gUCGGGcAGCgcuauCCGCCGaucGUGGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 188276 0.66 0.908303
Target:  5'- cCGGGUAGCggaugcagGgCGCCGcgcGcCGGACCc -3'
miRNA:   3'- aGUCCAUCGa-------CgGCGGCau-C-GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 62504 0.66 0.902206
Target:  5'- gCGGGcGGC-GCCGCCGgcGCcu-CCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCauCGucuGG- -5'
11003 3' -56.8 NC_002794.1 + 103983 0.66 0.902206
Target:  5'- gCGGGcgAGCUucgccgcgaaGCCGCCGccGGCGGaacGCCu -3'
miRNA:   3'- aGUCCa-UCGA----------CGGCGGCa-UCGUC---UGG- -5'
11003 3' -56.8 NC_002794.1 + 114031 0.66 0.902206
Target:  5'- gCGGGgcAGCgGCCGCCcGUAGUc-GCCg -3'
miRNA:   3'- aGUCCa-UCGaCGGCGG-CAUCGucUGG- -5'
11003 3' -56.8 NC_002794.1 + 121215 0.66 0.902206
Target:  5'- uUCGGGggcGGCcGCCGCCGcUA-CAGucGCCg -3'
miRNA:   3'- -AGUCCa--UCGaCGGCGGC-AUcGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 183684 0.66 0.902206
Target:  5'- aCGGGUcgAGCgcccGCCGCgCGcGGCGGcacaGCCa -3'
miRNA:   3'- aGUCCA--UCGa---CGGCG-GCaUCGUC----UGG- -5'
11003 3' -56.8 NC_002794.1 + 11991 0.66 0.895884
Target:  5'- gCGGcUGGUUGCUGCUGU-GUGGACUg -3'
miRNA:   3'- aGUCcAUCGACGGCGGCAuCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 32845 0.66 0.895884
Target:  5'- cUCAucGGUAGCggcaGCgGCCGagccGGCGGGCg -3'
miRNA:   3'- -AGU--CCAUCGa---CGgCGGCa---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 12754 0.66 0.895884
Target:  5'- cCAGG-AGCUGCCGCUcuuGCc-GCCg -3'
miRNA:   3'- aGUCCaUCGACGGCGGcauCGucUGG- -5'
11003 3' -56.8 NC_002794.1 + 56916 0.66 0.895884
Target:  5'- aCGGGcgccgGGCUGCCGgCCucgcacCAGACCa -3'
miRNA:   3'- aGUCCa----UCGACGGC-GGcauc--GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 110340 0.66 0.895884
Target:  5'- gCGGGgGGUcuCCGCCGUGGC-GACg -3'
miRNA:   3'- aGUCCaUCGacGGCGGCAUCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 37535 0.66 0.895884
Target:  5'- cCGGcUGGCgaacaGCCGCCGgaggGGCcacGACCg -3'
miRNA:   3'- aGUCcAUCGa----CGGCGGCa---UCGu--CUGG- -5'
11003 3' -56.8 NC_002794.1 + 120057 0.66 0.895884
Target:  5'- --cGGUGGCgGCCGCgGaGGCcGACg -3'
miRNA:   3'- aguCCAUCGaCGGCGgCaUCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 44258 0.66 0.895884
Target:  5'- cCGGGcGGCUcgGCCGCCGgggacggAGgAGuCCg -3'
miRNA:   3'- aGUCCaUCGA--CGGCGGCa------UCgUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 90944 0.67 0.889341
Target:  5'- -uGGGcgGGCUGUgCGCCGaGGCccGGGCCc -3'
miRNA:   3'- agUCCa-UCGACG-GCGGCaUCG--UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 190757 0.67 0.889341
Target:  5'- aCGGGggcGGCgGCCGCgCGUcccGGUAGAUg -3'
miRNA:   3'- aGUCCa--UCGaCGGCG-GCA---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 127362 0.67 0.889341
Target:  5'- gCGGcGgcGCgGCCGCuCGUgucGGCGGACg -3'
miRNA:   3'- aGUC-CauCGaCGGCG-GCA---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 115917 0.67 0.889341
Target:  5'- -gGGGUGGacuUGgCGCgGcGGCGGGCCg -3'
miRNA:   3'- agUCCAUCg--ACgGCGgCaUCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.