miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 190757 0.67 0.889341
Target:  5'- aCGGGggcGGCgGCCGCgCGUcccGGUAGAUg -3'
miRNA:   3'- aGUCCa--UCGaCGGCG-GCA---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 148130 0.67 0.889341
Target:  5'- gUCGGGc-GCgggGCCGCCGgGGCgaGGGCg -3'
miRNA:   3'- -AGUCCauCGa--CGGCGGCaUCG--UCUGg -5'
11003 3' -56.8 NC_002794.1 + 158746 0.67 0.882579
Target:  5'- cCGGGUAGUgUGCgCGCaCGUGGU-GAUCg -3'
miRNA:   3'- aGUCCAUCG-ACG-GCG-GCAUCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 36013 0.67 0.882579
Target:  5'- cUCGGGcGGCggaauCCGCCGUccGGCccGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCA--UCGu-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 112062 0.67 0.875603
Target:  5'- cUCGGGcgccAGCUGCaGCCGagucAGCAGGuCCc -3'
miRNA:   3'- -AGUCCa---UCGACGgCGGCa---UCGUCU-GG- -5'
11003 3' -56.8 NC_002794.1 + 13785 0.67 0.875603
Target:  5'- cCGGGUGGCUcCgGCCGUcuucgcgacgGGCccGGCCg -3'
miRNA:   3'- aGUCCAUCGAcGgCGGCA----------UCGu-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 185353 0.67 0.875603
Target:  5'- ------cGC-GCCGCCGcgAGCGGGCCg -3'
miRNA:   3'- aguccauCGaCGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 101206 0.67 0.868417
Target:  5'- -gAGGaGGCgGCCGCCc-GGCAGAUg -3'
miRNA:   3'- agUCCaUCGaCGGCGGcaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 71230 0.67 0.868417
Target:  5'- cCGcGUAGUgGCgGCCGgcGUGGACCg -3'
miRNA:   3'- aGUcCAUCGaCGgCGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 189422 0.67 0.868417
Target:  5'- gCGGGUucuGCUGCCGCagGUacAGCGcccgaaagucGGCCa -3'
miRNA:   3'- aGUCCAu--CGACGGCGg-CA--UCGU----------CUGG- -5'
11003 3' -56.8 NC_002794.1 + 135705 0.67 0.868417
Target:  5'- cCAGGUAGCgcucgaGCUGCugCGUAGCAucugcACCu -3'
miRNA:   3'- aGUCCAUCGa-----CGGCG--GCAUCGUc----UGG- -5'
11003 3' -56.8 NC_002794.1 + 92116 0.67 0.868417
Target:  5'- uUCAGacccGGCUGCCGCCGcugcccaAGCAGcUCa -3'
miRNA:   3'- -AGUCca--UCGACGGCGGCa------UCGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 48639 0.67 0.861026
Target:  5'- gUCGGGgcccGCgaGCCGCCGcAGacuCAGGCCc -3'
miRNA:   3'- -AGUCCau--CGa-CGGCGGCaUC---GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 184457 0.67 0.861026
Target:  5'- ------cGCUGCCGCCc--GCGGGCCg -3'
miRNA:   3'- aguccauCGACGGCGGcauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 66821 0.67 0.859524
Target:  5'- gUCAGGgcgcccGGCgcgacuccgggcGCCGCCGUcggcgcGGCgAGGCCg -3'
miRNA:   3'- -AGUCCa-----UCGa-----------CGGCGGCA------UCG-UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 95830 0.67 0.853437
Target:  5'- cCGGGggAGCggcggcgGCgGCCGgggaggcggcgGGCGGGCCg -3'
miRNA:   3'- aGUCCa-UCGa------CGgCGGCa----------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 56311 0.67 0.853437
Target:  5'- gUCGcGGUcGCUgGCgGCCGUGGCcGGCg -3'
miRNA:   3'- -AGU-CCAuCGA-CGgCGGCAUCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 116883 0.67 0.853437
Target:  5'- gUCAGGggGGCgccGgCGCCGUcuccGGCGG-CCg -3'
miRNA:   3'- -AGUCCa-UCGa--CgGCGGCA----UCGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 43639 0.67 0.853437
Target:  5'- gCuGGUGgaacacGCUGCCGCCGaacgAGcCGGGCUc -3'
miRNA:   3'- aGuCCAU------CGACGGCGGCa---UC-GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 37363 0.68 0.845654
Target:  5'- cCAGGUAGUcGaaGCUcgGgcGCAGGCCg -3'
miRNA:   3'- aGUCCAUCGaCggCGG--CauCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.