miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 91151 0.68 0.845654
Target:  5'- --cGGU-GCUGCugggCGCCGUGG-AGGCCu -3'
miRNA:   3'- aguCCAuCGACG----GCGGCAUCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 49519 0.68 0.845654
Target:  5'- cCGGGUacaugGGUUcGCgCGCCGcgAGCAGAUCc -3'
miRNA:   3'- aGUCCA-----UCGA-CG-GCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 37363 0.68 0.845654
Target:  5'- cCAGGUAGUcGaaGCUcgGgcGCAGGCCg -3'
miRNA:   3'- aGUCCAUCGaCggCGG--CauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 145261 0.68 0.845654
Target:  5'- aUCGcGaAGCgGUuauUGCCGUGGCAGGCCu -3'
miRNA:   3'- -AGUcCaUCGaCG---GCGGCAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 182761 0.68 0.837684
Target:  5'- aCAGGUAGCaGCCGCaCGcc-CGGuCCa -3'
miRNA:   3'- aGUCCAUCGaCGGCG-GCaucGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 91055 0.68 0.837684
Target:  5'- aCGGGgcGCgcgucgucaUGUaCGCCGUGGUGGGCUa -3'
miRNA:   3'- aGUCCauCG---------ACG-GCGGCAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 105263 0.68 0.829534
Target:  5'- aCAGGaGGCUGuaGUCG-AGCAG-CCa -3'
miRNA:   3'- aGUCCaUCGACggCGGCaUCGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 105377 0.68 0.821212
Target:  5'- gCAGGUccgacAGCUcgagcuguucgGCCGCCGc-GCGGAUCu -3'
miRNA:   3'- aGUCCA-----UCGA-----------CGGCGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 102686 0.68 0.816138
Target:  5'- cCGGGUgucguacgugcugacGGCcggGCCGCCGgacgGGCGcGCCa -3'
miRNA:   3'- aGUCCA---------------UCGa--CGGCGGCa---UCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 182016 0.68 0.812723
Target:  5'- cCGGGaccccGGCguccggGCCGCCGgcGacCAGACCa -3'
miRNA:   3'- aGUCCa----UCGa-----CGGCGGCauC--GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 134909 0.69 0.804077
Target:  5'- cUCGGGUGaaaCUuuucGCCGCCG-GGCGGACg -3'
miRNA:   3'- -AGUCCAUc--GA----CGGCGGCaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 36777 0.69 0.804077
Target:  5'- cCAGcuGUAGCcgGCCGCCGU-GUAcGCCg -3'
miRNA:   3'- aGUC--CAUCGa-CGGCGGCAuCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 101942 0.69 0.804077
Target:  5'- cCAGGgcauGCUGCCcugccugcCCGUGGCGGcguCCa -3'
miRNA:   3'- aGUCCau--CGACGGc-------GGCAUCGUCu--GG- -5'
11003 3' -56.8 NC_002794.1 + 111613 0.69 0.804077
Target:  5'- cCAGGccGGCgggGCCGCCGcGGCc-GCCg -3'
miRNA:   3'- aGUCCa-UCGa--CGGCGGCaUCGucUGG- -5'
11003 3' -56.8 NC_002794.1 + 77011 0.69 0.79528
Target:  5'- cCGGGa---UGCCGCCGgcGCAccucGACCg -3'
miRNA:   3'- aGUCCaucgACGGCGGCauCGU----CUGG- -5'
11003 3' -56.8 NC_002794.1 + 91876 0.69 0.79528
Target:  5'- -gGGGUGGCggcgGCgGCCGcgacgAGCAGuucacGCCg -3'
miRNA:   3'- agUCCAUCGa---CGgCGGCa----UCGUC-----UGG- -5'
11003 3' -56.8 NC_002794.1 + 137595 0.69 0.79528
Target:  5'- gCGGGgAGCcGCCGCCGgcggucgcggcGGCGGugCc -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCa----------UCGUCugG- -5'
11003 3' -56.8 NC_002794.1 + 65232 0.69 0.79528
Target:  5'- aCGGGcGGCgGUCGCCGcGGCGGcgauCCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCaUCGUCu---GG- -5'
11003 3' -56.8 NC_002794.1 + 37770 0.69 0.79528
Target:  5'- gCGGG-AGCgGCCGUCGUcGUcGGCCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCAuCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 43072 0.69 0.79528
Target:  5'- aCAGGgcGUUcucGCaGCUGUAGCGGACg -3'
miRNA:   3'- aGUCCauCGA---CGgCGGCAUCGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.