miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 11991 0.66 0.895884
Target:  5'- gCGGcUGGUUGCUGCUGU-GUGGACUg -3'
miRNA:   3'- aGUCcAUCGACGGCGGCAuCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 12754 0.66 0.895884
Target:  5'- cCAGG-AGCUGCCGCUcuuGCc-GCCg -3'
miRNA:   3'- aGUCCaUCGACGGCGGcauCGucUGG- -5'
11003 3' -56.8 NC_002794.1 + 13785 0.67 0.875603
Target:  5'- cCGGGUGGCUcCgGCCGUcuucgcgacgGGCccGGCCg -3'
miRNA:   3'- aGUCCAUCGAcGgCGGCA----------UCGu-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 14565 0.74 0.502914
Target:  5'- gCGGGaGGCgagccgGCCGaCCGaAGCGGGCCg -3'
miRNA:   3'- aGUCCaUCGa-----CGGC-GGCaUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 24084 0.68 0.845654
Target:  5'- cCGGGcgGGC-GUCGCCGUAuuaaAGACCg -3'
miRNA:   3'- aGUCCa-UCGaCGGCGGCAUcg--UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 29923 0.72 0.631001
Target:  5'- aCGGGcAGCgacgaGCCGCCGUccgggaAGCGGcACCu -3'
miRNA:   3'- aGUCCaUCGa----CGGCGGCA------UCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 32845 0.66 0.895884
Target:  5'- cUCAucGGUAGCggcaGCgGCCGagccGGCGGGCg -3'
miRNA:   3'- -AGU--CCAUCGa---CGgCGGCa---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 33579 0.71 0.691025
Target:  5'- cCAGGUGGUgGaCCGCCuGcGGCGGACg -3'
miRNA:   3'- aGUCCAUCGaC-GGCGG-CaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 34235 0.8 0.234523
Target:  5'- gCAGGagcugcacgcgcGGCUGCCGCCGcaGGCGGACCg -3'
miRNA:   3'- aGUCCa-----------UCGACGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 35504 0.7 0.720509
Target:  5'- gCAGGUGGUgGCCGCCGUgcccAGCGucuacauccuGcACCg -3'
miRNA:   3'- aGUCCAUCGaCGGCGGCA----UCGU----------C-UGG- -5'
11003 3' -56.8 NC_002794.1 + 36013 0.67 0.882579
Target:  5'- cUCGGGcGGCggaauCCGCCGUccGGCccGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCA--UCGu-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 36777 0.69 0.804077
Target:  5'- cCAGcuGUAGCcgGCCGCCGU-GUAcGCCg -3'
miRNA:   3'- aGUC--CAUCGa-CGGCGGCAuCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 37363 0.68 0.845654
Target:  5'- cCAGGUAGUcGaaGCUcgGgcGCAGGCCg -3'
miRNA:   3'- aGUCCAUCGaCggCGG--CauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 37535 0.66 0.895884
Target:  5'- cCGGcUGGCgaacaGCCGCCGgaggGGCcacGACCg -3'
miRNA:   3'- aGUCcAUCGa----CGGCGGCa---UCGu--CUGG- -5'
11003 3' -56.8 NC_002794.1 + 37770 0.69 0.79528
Target:  5'- gCGGG-AGCgGCCGUCGUcGUcGGCCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCAuCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 41841 0.72 0.620955
Target:  5'- gUCGGGUcgaucagcAGCcccagGCCGCCG-GGCAGgGCCg -3'
miRNA:   3'- -AGUCCA--------UCGa----CGGCGGCaUCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 42595 0.7 0.749336
Target:  5'- -gAGGgcGCgGCgGCCGggAGCGGGCUc -3'
miRNA:   3'- agUCCauCGaCGgCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 43072 0.69 0.79528
Target:  5'- aCAGGgcGUUcucGCaGCUGUAGCGGACg -3'
miRNA:   3'- aGUCCauCGA---CGgCGGCAUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 43639 0.67 0.853437
Target:  5'- gCuGGUGgaacacGCUGCCGCCGaacgAGcCGGGCUc -3'
miRNA:   3'- aGuCCAU------CGACGGCGGCa---UC-GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 44258 0.66 0.895884
Target:  5'- cCGGGcGGCUcgGCCGCCGgggacggAGgAGuCCg -3'
miRNA:   3'- aGUCCaUCGA--CGGCGGCa------UCgUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.