miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 47116 0.66 0.919261
Target:  5'- -gAGGUGgaguuccGCUGCCGCCGacucuucGGcCGGACg -3'
miRNA:   3'- agUCCAU-------CGACGGCGGCa------UC-GUCUGg -5'
11003 3' -56.8 NC_002794.1 + 48472 0.74 0.522045
Target:  5'- gUCAGGgcGaaGCCGCCG-GGCAGcGCCc -3'
miRNA:   3'- -AGUCCauCgaCGGCGGCaUCGUC-UGG- -5'
11003 3' -56.8 NC_002794.1 + 48639 0.67 0.861026
Target:  5'- gUCGGGgcccGCgaGCCGCCGcAGacuCAGGCCc -3'
miRNA:   3'- -AGUCCau--CGa-CGGCGGCaUC---GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 48857 0.72 0.635021
Target:  5'- gCAGGgcGCgauaguccccgucgGCgGCCagGUGGCAGGCCa -3'
miRNA:   3'- aGUCCauCGa-------------CGgCGG--CAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 49437 0.66 0.924696
Target:  5'- aCGGcGUccGGCgcggucGUCGCCGUGGCGccgccguGACCg -3'
miRNA:   3'- aGUC-CA--UCGa-----CGGCGGCAUCGU-------CUGG- -5'
11003 3' -56.8 NC_002794.1 + 49519 0.68 0.845654
Target:  5'- cCGGGUacaugGGUUcGCgCGCCGcgAGCAGAUCc -3'
miRNA:   3'- aGUCCA-----UCGA-CG-GCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 50595 0.66 0.908303
Target:  5'- -uGGGUGGCcGgCGCCG-GGgGGAUCg -3'
miRNA:   3'- agUCCAUCGaCgGCGGCaUCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 56311 0.67 0.853437
Target:  5'- gUCGcGGUcGCUgGCgGCCGUGGCcGGCg -3'
miRNA:   3'- -AGU-CCAuCGA-CGgCGGCAUCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 56916 0.66 0.895884
Target:  5'- aCGGGcgccgGGCUGCCGgCCucgcacCAGACCa -3'
miRNA:   3'- aGUCCa----UCGACGGC-GGcauc--GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 62504 0.66 0.902206
Target:  5'- gCGGGcGGC-GCCGCCGgcGCcu-CCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCauCGucuGG- -5'
11003 3' -56.8 NC_002794.1 + 62689 0.66 0.908303
Target:  5'- gCGGGUgcagcugugucGGCgGCCGCCGacGC-GACCc -3'
miRNA:   3'- aGUCCA-----------UCGaCGGCGGCauCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 65232 0.69 0.79528
Target:  5'- aCGGGcGGCgGUCGCCGcGGCGGcgauCCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCaUCGUCu---GG- -5'
11003 3' -56.8 NC_002794.1 + 66821 0.67 0.859524
Target:  5'- gUCAGGgcgcccGGCgcgacuccgggcGCCGCCGUcggcgcGGCgAGGCCg -3'
miRNA:   3'- -AGUCCa-----UCGa-----------CGGCGGCA------UCG-UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 67027 0.66 0.925226
Target:  5'- gCGGccGGCUcCCGCCGcgucGCGGACCc -3'
miRNA:   3'- aGUCcaUCGAcGGCGGCau--CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 69516 0.66 0.925226
Target:  5'- gUCAGGUacGGCgcgUGCacgagaGCCG-AGUAGACg -3'
miRNA:   3'- -AGUCCA--UCG---ACGg-----CGGCaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 70228 0.72 0.631001
Target:  5'- gUCGGGcgGGCggccgGCCGCCccgcAGCAGACg -3'
miRNA:   3'- -AGUCCa-UCGa----CGGCGGca--UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 71057 0.71 0.691025
Target:  5'- --cGGaAGCcGCCGCCGcAGCAGccGCCg -3'
miRNA:   3'- aguCCaUCGaCGGCGGCaUCGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 71230 0.67 0.868417
Target:  5'- cCGcGUAGUgGCgGCCGgcGUGGACCg -3'
miRNA:   3'- aGUcCAUCGaCGgCGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 71365 0.66 0.908303
Target:  5'- gCAGGUgcGGCaGCCGCCcca--GGACCu -3'
miRNA:   3'- aGUCCA--UCGaCGGCGGcaucgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 72743 0.67 0.889341
Target:  5'- cUCccGcGGCgGCCGCCGaccgAGCGGAUCu -3'
miRNA:   3'- -AGucCaUCGaCGGCGGCa---UCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.