miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 74095 0.73 0.531716
Target:  5'- gUCGGGacAGCUGCgGCUGcucacccucgAGCAGGCCg -3'
miRNA:   3'- -AGUCCa-UCGACGgCGGCa---------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 77011 0.69 0.79528
Target:  5'- cCGGGa---UGCCGCCGgcGCAccucGACCg -3'
miRNA:   3'- aGUCCaucgACGGCGGCauCGU----CUGG- -5'
11003 3' -56.8 NC_002794.1 + 80416 0.77 0.363342
Target:  5'- cCAGGUGGCgccgggcgggGCCGCCGccGGCGGccGCCg -3'
miRNA:   3'- aGUCCAUCGa---------CGGCGGCa-UCGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 81413 0.7 0.710743
Target:  5'- cUCGGG-AGCUGCuCGCCc-GGCuucgAGACCg -3'
miRNA:   3'- -AGUCCaUCGACG-GCGGcaUCG----UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 88960 0.69 0.768072
Target:  5'- cUCGGuacgAGCgugGCCGCCGgaucgucgcGGCAGAUCg -3'
miRNA:   3'- -AGUCca--UCGa--CGGCGGCa--------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 90944 0.67 0.889341
Target:  5'- -uGGGcgGGCUGUgCGCCGaGGCccGGGCCc -3'
miRNA:   3'- agUCCa-UCGACG-GCGGCaUCG--UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 91055 0.68 0.837684
Target:  5'- aCGGGgcGCgcgucgucaUGUaCGCCGUGGUGGGCUa -3'
miRNA:   3'- aGUCCauCG---------ACG-GCGGCAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 91115 0.69 0.768072
Target:  5'- cCGGGcAGCUGgUGCCGUGcguggaggaggcGCGGACg -3'
miRNA:   3'- aGUCCaUCGACgGCGGCAU------------CGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 91151 0.68 0.845654
Target:  5'- --cGGU-GCUGCugggCGCCGUGG-AGGCCu -3'
miRNA:   3'- aguCCAuCGACG----GCGGCAUCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 91464 0.66 0.919815
Target:  5'- cCAGa-AGCUGaCGCCGggcgAGCGcGACCa -3'
miRNA:   3'- aGUCcaUCGACgGCGGCa---UCGU-CUGG- -5'
11003 3' -56.8 NC_002794.1 + 91876 0.69 0.79528
Target:  5'- -gGGGUGGCggcgGCgGCCGcgacgAGCAGuucacGCCg -3'
miRNA:   3'- agUCCAUCGa---CGgCGGCa----UCGUC-----UGG- -5'
11003 3' -56.8 NC_002794.1 + 92116 0.67 0.868417
Target:  5'- uUCAGacccGGCUGCCGCCGcugcccaAGCAGcUCa -3'
miRNA:   3'- -AGUCca--UCGACGGCGGCa------UCGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 92556 0.69 0.758758
Target:  5'- -gAGGUGGCcGgCGCCac-GCAGGCCu -3'
miRNA:   3'- agUCCAUCGaCgGCGGcauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 92605 0.66 0.919815
Target:  5'- --cGGUGGCcuucucGCCGCUGcUGGCGcACCa -3'
miRNA:   3'- aguCCAUCGa-----CGGCGGC-AUCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 95830 0.67 0.853437
Target:  5'- cCGGGggAGCggcggcgGCgGCCGgggaggcggcgGGCGGGCCg -3'
miRNA:   3'- aGUCCa-UCGa------CGgCGGCa----------UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 96913 0.66 0.908303
Target:  5'- -gAGGUGGCggaGgCGCCGgcgacAGCAcGCCg -3'
miRNA:   3'- agUCCAUCGa--CgGCGGCa----UCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 99930 0.66 0.919815
Target:  5'- gCGGcGUGGUcuUGCgGCUGUucGGCcGGACCg -3'
miRNA:   3'- aGUC-CAUCG--ACGgCGGCA--UCG-UCUGG- -5'
11003 3' -56.8 NC_002794.1 + 101117 0.7 0.749336
Target:  5'- -----aGGCcGCCGCCGUGGCGcGCCu -3'
miRNA:   3'- aguccaUCGaCGGCGGCAUCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 101206 0.67 0.868417
Target:  5'- -gAGGaGGCgGCCGCCc-GGCAGAUg -3'
miRNA:   3'- agUCCaUCGaCGGCGGcaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 101942 0.69 0.804077
Target:  5'- cCAGGgcauGCUGCCcugccugcCCGUGGCGGcguCCa -3'
miRNA:   3'- aGUCCau--CGACGGc-------GGCAUCGUCu--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.