miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 190757 0.67 0.889341
Target:  5'- aCGGGggcGGCgGCCGCgCGUcccGGUAGAUg -3'
miRNA:   3'- aGUCCa--UCGaCGGCG-GCA---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 189422 0.67 0.868417
Target:  5'- gCGGGUucuGCUGCCGCagGUacAGCGcccgaaagucGGCCa -3'
miRNA:   3'- aGUCCAu--CGACGGCGg-CA--UCGU----------CUGG- -5'
11003 3' -56.8 NC_002794.1 + 188556 0.71 0.681091
Target:  5'- gCGGGUAcuGCUGCCGCaCGU-GCcGACa -3'
miRNA:   3'- aGUCCAU--CGACGGCG-GCAuCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 188276 0.66 0.908303
Target:  5'- cCGGGUAGCggaugcagGgCGCCGcgcGcCGGACCc -3'
miRNA:   3'- aGUCCAUCGa-------CgGCGGCau-C-GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 186955 0.66 0.919261
Target:  5'- cCGGGccGCUgGCCGCCGccuccAGCAGcgcgcgcACCa -3'
miRNA:   3'- aGUCCauCGA-CGGCGGCa----UCGUC-------UGG- -5'
11003 3' -56.8 NC_002794.1 + 185473 0.7 0.710743
Target:  5'- gCGGGcGGCgGCCGCgGcgAGgGGACCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGgCa-UCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 185353 0.67 0.875603
Target:  5'- ------cGC-GCCGCCGcgAGCGGGCCg -3'
miRNA:   3'- aguccauCGaCGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 185060 0.69 0.757821
Target:  5'- --uGGUcugcagccgccgcGGCccGUCGCCGUAGCAGGCg -3'
miRNA:   3'- aguCCA-------------UCGa-CGGCGGCAUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 184457 0.67 0.861026
Target:  5'- ------cGCUGCCGCCc--GCGGGCCg -3'
miRNA:   3'- aguccauCGACGGCGGcauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 183684 0.66 0.902206
Target:  5'- aCGGGUcgAGCgcccGCCGCgCGcGGCGGcacaGCCa -3'
miRNA:   3'- aGUCCA--UCGa---CGGCG-GCaUCGUC----UGG- -5'
11003 3' -56.8 NC_002794.1 + 182761 0.68 0.837684
Target:  5'- aCAGGUAGCaGCCGCaCGcc-CGGuCCa -3'
miRNA:   3'- aGUCCAUCGaCGGCG-GCaucGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 182016 0.68 0.812723
Target:  5'- cCGGGaccccGGCguccggGCCGCCGgcGacCAGACCa -3'
miRNA:   3'- aGUCCa----UCGa-----CGGCGGCauC--GUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 158746 0.67 0.882579
Target:  5'- cCGGGUAGUgUGCgCGCaCGUGGU-GAUCg -3'
miRNA:   3'- aGUCCAUCG-ACG-GCG-GCAUCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 151583 0.7 0.730203
Target:  5'- cCGGcGgcGCgcGCCGCCGccGCGGGCCc -3'
miRNA:   3'- aGUC-CauCGa-CGGCGGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 149515 0.69 0.786342
Target:  5'- aCGGG--GUcGUCGCCGggAGCGGACCu -3'
miRNA:   3'- aGUCCauCGaCGGCGGCa-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 148130 0.67 0.889341
Target:  5'- gUCGGGc-GCgggGCCGCCGgGGCgaGGGCg -3'
miRNA:   3'- -AGUCCauCGa--CGGCGGCaUCG--UCUGg -5'
11003 3' -56.8 NC_002794.1 + 146368 0.66 0.925226
Target:  5'- cCGGGUAGCcGuCCGCuCGUc-CAGACa -3'
miRNA:   3'- aGUCCAUCGaC-GGCG-GCAucGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 146175 0.66 0.914174
Target:  5'- aUCAGG-AGCgcuucgagGCCGa-GgcGCGGGCCu -3'
miRNA:   3'- -AGUCCaUCGa-------CGGCggCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 145261 0.68 0.845654
Target:  5'- aUCGcGaAGCgGUuauUGCCGUGGCAGGCCu -3'
miRNA:   3'- -AGUcCaUCGaCG---GCGGCAUCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 143682 0.72 0.589895
Target:  5'- gUCAGG-AGCUGCCGCagggucgCGUugcccaccGCGGGCCc -3'
miRNA:   3'- -AGUCCaUCGACGGCG-------GCAu-------CGUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.