miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 143391 0.73 0.531716
Target:  5'- -aGGGUcAGCUGCUGCucgacCGgcGCGGGCCg -3'
miRNA:   3'- agUCCA-UCGACGGCG-----GCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 142982 0.66 0.914174
Target:  5'- -gAGG-GGCUGCgugccCGCCGUGGCcaGGAaCCc -3'
miRNA:   3'- agUCCaUCGACG-----GCGGCAUCG--UCU-GG- -5'
11003 3' -56.8 NC_002794.1 + 142719 0.7 0.739815
Target:  5'- --uGGUGGUggggGUCGCgGUAacGCAGGCCg -3'
miRNA:   3'- aguCCAUCGa---CGGCGgCAU--CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 142308 0.69 0.758758
Target:  5'- aCAGGUGGCggaGgCGgCGgcGCAGGCg -3'
miRNA:   3'- aGUCCAUCGa--CgGCgGCauCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 141668 0.69 0.79528
Target:  5'- gCGGGUcgAGCgaagacggGUCGCCGUAcGCGGuCCc -3'
miRNA:   3'- aGUCCA--UCGa-------CGGCGGCAU-CGUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 138910 0.66 0.914174
Target:  5'- aUCAGGU-GCUGaCCGC---GGCGGAUg -3'
miRNA:   3'- -AGUCCAuCGAC-GGCGgcaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 137595 0.69 0.79528
Target:  5'- gCGGGgAGCcGCCGCCGgcggucgcggcGGCGGugCc -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCa----------UCGUCugG- -5'
11003 3' -56.8 NC_002794.1 + 135705 0.67 0.868417
Target:  5'- cCAGGUAGCgcucgaGCUGCugCGUAGCAucugcACCu -3'
miRNA:   3'- aGUCCAUCGa-----CGGCG--GCAUCGUc----UGG- -5'
11003 3' -56.8 NC_002794.1 + 134909 0.69 0.804077
Target:  5'- cUCGGGUGaaaCUuuucGCCGCCG-GGCGGACg -3'
miRNA:   3'- -AGUCCAUc--GA----CGGCGGCaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 130591 0.66 0.908303
Target:  5'- gUCGGGcAGCgcuauCCGCCGaucGUGGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 129256 0.71 0.651089
Target:  5'- cUCGGGUcgAGC-GCCucGUCGUgAGCGGGCCg -3'
miRNA:   3'- -AGUCCA--UCGaCGG--CGGCA-UCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 127362 0.67 0.889341
Target:  5'- gCGGcGgcGCgGCCGCuCGUgucGGCGGACg -3'
miRNA:   3'- aGUC-CauCGaCGGCG-GCA---UCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 122974 0.72 0.620955
Target:  5'- -gGGGUGGCUGUacgcgCGCCugguGCGGGCCg -3'
miRNA:   3'- agUCCAUCGACG-----GCGGcau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 122644 0.66 0.919815
Target:  5'- --cGGUGGacgugaucuacCUGCUGgCGgcGCAGGCCc -3'
miRNA:   3'- aguCCAUC-----------GACGGCgGCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 121215 0.66 0.902206
Target:  5'- uUCGGGggcGGCcGCCGCCGcUA-CAGucGCCg -3'
miRNA:   3'- -AGUCCa--UCGaCGGCGGC-AUcGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 120057 0.66 0.895884
Target:  5'- --cGGUGGCgGCCGCgGaGGCcGACg -3'
miRNA:   3'- aguCCAUCGaCGGCGgCaUCGuCUGg -5'
11003 3' -56.8 NC_002794.1 + 118974 0.66 0.925226
Target:  5'- gUCAGGUGGCggaGCaCGuCCGggcgcgGGgAGACg -3'
miRNA:   3'- -AGUCCAUCGa--CG-GC-GGCa-----UCgUCUGg -5'
11003 3' -56.8 NC_002794.1 + 117995 0.73 0.541451
Target:  5'- gCAGG-GGCUGCCGCgGcaggagcaccUGGCAGGCg -3'
miRNA:   3'- aGUCCaUCGACGGCGgC----------AUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 117426 0.72 0.600894
Target:  5'- gCAGG-AGCUGCCGCgaggCGUuGCGGAUg -3'
miRNA:   3'- aGUCCaUCGACGGCG----GCAuCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 116883 0.67 0.853437
Target:  5'- gUCAGGggGGCgccGgCGCCGUcuccGGCGG-CCg -3'
miRNA:   3'- -AGUCCa-UCGa--CgGCGGCA----UCGUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.