Results 1 - 20 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 34235 | 0.8 | 0.234523 |
Target: 5'- gCAGGagcugcacgcgcGGCUGCCGCCGcaGGCGGACCg -3' miRNA: 3'- aGUCCa-----------UCGACGGCGGCa-UCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 47116 | 0.66 | 0.919261 |
Target: 5'- -gAGGUGgaguuccGCUGCCGCCGacucuucGGcCGGACg -3' miRNA: 3'- agUCCAU-------CGACGGCGGCa------UC-GUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 115298 | 0.66 | 0.916458 |
Target: 5'- aCGGGgaccGCUgcGCCGCCGUccgcacggucgccgcGGCguccGGGCCg -3' miRNA: 3'- aGUCCau--CGA--CGGCGGCA---------------UCG----UCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 146175 | 0.66 | 0.914174 |
Target: 5'- aUCAGG-AGCgcuucgagGCCGa-GgcGCGGGCCu -3' miRNA: 3'- -AGUCCaUCGa-------CGGCggCauCGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 142982 | 0.66 | 0.914174 |
Target: 5'- -gAGG-GGCUGCgugccCGCCGUGGCcaGGAaCCc -3' miRNA: 3'- agUCCaUCGACG-----GCGGCAUCG--UCU-GG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 188276 | 0.66 | 0.908303 |
Target: 5'- cCGGGUAGCggaugcagGgCGCCGcgcGcCGGACCc -3' miRNA: 3'- aGUCCAUCGa-------CgGCGGCau-C-GUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 138910 | 0.66 | 0.914174 |
Target: 5'- aUCAGGU-GCUGaCCGC---GGCGGAUg -3' miRNA: 3'- -AGUCCAuCGAC-GGCGgcaUCGUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 130591 | 0.66 | 0.908303 |
Target: 5'- gUCGGGcAGCgcuauCCGCCGaucGUGGGCCg -3' miRNA: 3'- -AGUCCaUCGac---GGCGGCau-CGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 96913 | 0.66 | 0.908303 |
Target: 5'- -gAGGUGGCggaGgCGCCGgcgacAGCAcGCCg -3' miRNA: 3'- agUCCAUCGa--CgGCGGCa----UCGUcUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 99930 | 0.66 | 0.919815 |
Target: 5'- gCGGcGUGGUcuUGCgGCUGUucGGCcGGACCg -3' miRNA: 3'- aGUC-CAUCG--ACGgCGGCA--UCG-UCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 91464 | 0.66 | 0.919815 |
Target: 5'- cCAGa-AGCUGaCGCCGggcgAGCGcGACCa -3' miRNA: 3'- aGUCcaUCGACgGCGGCa---UCGU-CUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 186955 | 0.66 | 0.919261 |
Target: 5'- cCGGGccGCUgGCCGCCGccuccAGCAGcgcgcgcACCa -3' miRNA: 3'- aGUCCauCGA-CGGCGGCa----UCGUC-------UGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 118974 | 0.66 | 0.925226 |
Target: 5'- gUCAGGUGGCggaGCaCGuCCGggcgcgGGgAGACg -3' miRNA: 3'- -AGUCCAUCGa--CG-GC-GGCa-----UCgUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 112238 | 0.66 | 0.925226 |
Target: 5'- cCAGGgccgccGCgaacGCCGCCGgcG-GGACCg -3' miRNA: 3'- aGUCCau----CGa---CGGCGGCauCgUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 69516 | 0.66 | 0.925226 |
Target: 5'- gUCAGGUacGGCgcgUGCacgagaGCCG-AGUAGACg -3' miRNA: 3'- -AGUCCA--UCG---ACGg-----CGGCaUCGUCUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 67027 | 0.66 | 0.925226 |
Target: 5'- gCGGccGGCUcCCGCCGcgucGCGGACCc -3' miRNA: 3'- aGUCcaUCGAcGGCGGCau--CGUCUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 92605 | 0.66 | 0.919815 |
Target: 5'- --cGGUGGCcuucucGCCGCUGcUGGCGcACCa -3' miRNA: 3'- aguCCAUCGa-----CGGCGGC-AUCGUcUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 49437 | 0.66 | 0.924696 |
Target: 5'- aCGGcGUccGGCgcggucGUCGCCGUGGCGccgccguGACCg -3' miRNA: 3'- aGUC-CA--UCGa-----CGGCGGCAUCGU-------CUGG- -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 104755 | 0.66 | 0.919815 |
Target: 5'- cUCGuGGUAGCggucgGcCCGCCGgcGCuccGACa -3' miRNA: 3'- -AGU-CCAUCGa----C-GGCGGCauCGu--CUGg -5' |
|||||||
11003 | 3' | -56.8 | NC_002794.1 | + | 122644 | 0.66 | 0.919815 |
Target: 5'- --cGGUGGacgugaucuacCUGCUGgCGgcGCAGGCCc -3' miRNA: 3'- aguCCAUC-----------GACGGCgGCauCGUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home