miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 3' -56.8 NC_002794.1 + 92605 0.66 0.919815
Target:  5'- --cGGUGGCcuucucGCCGCUGcUGGCGcACCa -3'
miRNA:   3'- aguCCAUCGa-----CGGCGGC-AUCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 67027 0.66 0.925226
Target:  5'- gCGGccGGCUcCCGCCGcgucGCGGACCc -3'
miRNA:   3'- aGUCcaUCGAcGGCGGCau--CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 69516 0.66 0.925226
Target:  5'- gUCAGGUacGGCgcgUGCacgagaGCCG-AGUAGACg -3'
miRNA:   3'- -AGUCCA--UCG---ACGg-----CGGCaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 112238 0.66 0.925226
Target:  5'- cCAGGgccgccGCgaacGCCGCCGgcG-GGACCg -3'
miRNA:   3'- aGUCCau----CGa---CGGCGGCauCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 118974 0.66 0.925226
Target:  5'- gUCAGGUGGCggaGCaCGuCCGggcgcgGGgAGACg -3'
miRNA:   3'- -AGUCCAUCGa--CG-GC-GGCa-----UCgUCUGg -5'
11003 3' -56.8 NC_002794.1 + 146175 0.66 0.914174
Target:  5'- aUCAGG-AGCgcuucgagGCCGa-GgcGCGGGCCu -3'
miRNA:   3'- -AGUCCaUCGa-------CGGCggCauCGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 142982 0.66 0.914174
Target:  5'- -gAGG-GGCUGCgugccCGCCGUGGCcaGGAaCCc -3'
miRNA:   3'- agUCCaUCGACG-----GCGGCAUCG--UCU-GG- -5'
11003 3' -56.8 NC_002794.1 + 44258 0.66 0.895884
Target:  5'- cCGGGcGGCUcgGCCGCCGgggacggAGgAGuCCg -3'
miRNA:   3'- aGUCCaUCGA--CGGCGGCa------UCgUCuGG- -5'
11003 3' -56.8 NC_002794.1 + 62504 0.66 0.902206
Target:  5'- gCGGGcGGC-GCCGCCGgcGCcu-CCg -3'
miRNA:   3'- aGUCCaUCGaCGGCGGCauCGucuGG- -5'
11003 3' -56.8 NC_002794.1 + 103983 0.66 0.902206
Target:  5'- gCGGGcgAGCUucgccgcgaaGCCGCCGccGGCGGaacGCCu -3'
miRNA:   3'- aGUCCa-UCGA----------CGGCGGCa-UCGUC---UGG- -5'
11003 3' -56.8 NC_002794.1 + 114031 0.66 0.902206
Target:  5'- gCGGGgcAGCgGCCGCCcGUAGUc-GCCg -3'
miRNA:   3'- aGUCCa-UCGaCGGCGG-CAUCGucUGG- -5'
11003 3' -56.8 NC_002794.1 + 121215 0.66 0.902206
Target:  5'- uUCGGGggcGGCcGCCGCCGcUA-CAGucGCCg -3'
miRNA:   3'- -AGUCCa--UCGaCGGCGGC-AUcGUC--UGG- -5'
11003 3' -56.8 NC_002794.1 + 71365 0.66 0.908303
Target:  5'- gCAGGUgcGGCaGCCGCCcca--GGACCu -3'
miRNA:   3'- aGUCCA--UCGaCGGCGGcaucgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 183684 0.66 0.902206
Target:  5'- aCGGGUcgAGCgcccGCCGCgCGcGGCGGcacaGCCa -3'
miRNA:   3'- aGUCCA--UCGa---CGGCG-GCaUCGUC----UGG- -5'
11003 3' -56.8 NC_002794.1 + 62689 0.66 0.908303
Target:  5'- gCGGGUgcagcugugucGGCgGCCGCCGacGC-GACCc -3'
miRNA:   3'- aGUCCA-----------UCGaCGGCGGCauCGuCUGG- -5'
11003 3' -56.8 NC_002794.1 + 50595 0.66 0.908303
Target:  5'- -uGGGUGGCcGgCGCCG-GGgGGAUCg -3'
miRNA:   3'- agUCCAUCGaCgGCGGCaUCgUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 96913 0.66 0.908303
Target:  5'- -gAGGUGGCggaGgCGCCGgcgacAGCAcGCCg -3'
miRNA:   3'- agUCCAUCGa--CgGCGGCa----UCGUcUGG- -5'
11003 3' -56.8 NC_002794.1 + 130591 0.66 0.908303
Target:  5'- gUCGGGcAGCgcuauCCGCCGaucGUGGGCCg -3'
miRNA:   3'- -AGUCCaUCGac---GGCGGCau-CGUCUGG- -5'
11003 3' -56.8 NC_002794.1 + 138910 0.66 0.914174
Target:  5'- aUCAGGU-GCUGaCCGC---GGCGGAUg -3'
miRNA:   3'- -AGUCCAuCGAC-GGCGgcaUCGUCUGg -5'
11003 3' -56.8 NC_002794.1 + 188276 0.66 0.908303
Target:  5'- cCGGGUAGCggaugcagGgCGCCGcgcGcCGGACCc -3'
miRNA:   3'- aGUCCAUCGa-------CgGCGGCau-C-GUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.