miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 13097 0.65 0.780169
Target:  5'- cCCGGGggacgaggugcguuCGG-CGGGGU---CGCCGCGCg -3'
miRNA:   3'- -GGCCU--------------GCCgGUCCCGguuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 123512 0.66 0.777564
Target:  5'- gCCGGGCuGCCGgccugcagcugguucGGGCaCAcGCGCUACaGCc -3'
miRNA:   3'- -GGCCUGcCGGU---------------CCCG-GU-UGCGGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 58920 0.66 0.774074
Target:  5'- cUCGGACGuGCC-GcGCCugcACGCCAUGg -3'
miRNA:   3'- -GGCCUGC-CGGuCcCGGu--UGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 101651 0.66 0.774074
Target:  5'- gCGGGCGGgCGGcGGUUAgcccguccgaaACGCCggcggaGCGCg -3'
miRNA:   3'- gGCCUGCCgGUC-CCGGU-----------UGCGG------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 115193 0.66 0.774074
Target:  5'- gCCGG-CGGUCGa-GCCGGCGUaGCGCc -3'
miRNA:   3'- -GGCCuGCCGGUccCGGUUGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 103390 0.66 0.774074
Target:  5'- gCGGG-GGUagaugaGGGGCaccacgucgggCAGCGCCGCGUg -3'
miRNA:   3'- gGCCUgCCGg-----UCCCG-----------GUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 70869 0.66 0.774074
Target:  5'- uCCGGcgGCGGCagCGGcGGCUccucgAGCGCCAgGUc -3'
miRNA:   3'- -GGCC--UGCCG--GUC-CCGG-----UUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 122288 0.66 0.773199
Target:  5'- cCUGGACGGgcgcgaggagugcCCGcuGGCCGuCGCCguGCGCg -3'
miRNA:   3'- -GGCCUGCC-------------GGUc-CCGGUuGCGG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 12742 0.66 0.773199
Target:  5'- cCCGGucCGcuaCCAGGagcugccgcucuuGCCGcCGCCGCGCu -3'
miRNA:   3'- -GGCCu-GCc--GGUCC-------------CGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 179668 0.66 0.768807
Target:  5'- gCCGGACGGCacccgcggcggcgaCGGuGGCggcggcgacgguggCGACGCCG-GCg -3'
miRNA:   3'- -GGCCUGCCG--------------GUC-CCG--------------GUUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 37534 0.66 0.768807
Target:  5'- cCCGGcUGGCgaacagccgccggaGGGGCC-ACGaCCGCGUc -3'
miRNA:   3'- -GGCCuGCCGg-------------UCCCGGuUGC-GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 145937 0.66 0.765274
Target:  5'- gCCGGcgagaGCGGuUCGGGaGUCGcgaGCGCCcaGCGCg -3'
miRNA:   3'- -GGCC-----UGCC-GGUCC-CGGU---UGCGG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 24064 0.66 0.765274
Target:  5'- cCCGGACcacacccguGcGCCcGGGCgGGCGUCGcCGUa -3'
miRNA:   3'- -GGCCUG---------C-CGGuCCCGgUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 156014 0.66 0.765274
Target:  5'- aCGGG-GGUCucauGGGUCGcagccgucGCGUCGCGCg -3'
miRNA:   3'- gGCCUgCCGGu---CCCGGU--------UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 42644 0.66 0.765274
Target:  5'- gCGGagucGCGGCCGaaGCCGacgGCGCCGCcgGCa -3'
miRNA:   3'- gGCC----UGCCGGUccCGGU---UGCGGUG--CG- -5'
11003 5' -61.7 NC_002794.1 + 116906 0.66 0.765274
Target:  5'- uCCGG-CGGCC-GGuCCGGCGUCG-GCu -3'
miRNA:   3'- -GGCCuGCCGGuCCcGGUUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 114027 0.66 0.765274
Target:  5'- aCaGGCgGGgCAGcGGCCGcccguaguCGCCGCGCa -3'
miRNA:   3'- gGcCUG-CCgGUC-CCGGUu-------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 107333 0.66 0.765274
Target:  5'- uUCGGcuuCGGuCCGuGGGuCCGGuCGCCGCGa -3'
miRNA:   3'- -GGCCu--GCC-GGU-CCC-GGUU-GCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 133465 0.66 0.765274
Target:  5'- gCGGACGGgUAugcGGGCgCGACuCUugGCu -3'
miRNA:   3'- gGCCUGCCgGU---CCCG-GUUGcGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 139892 0.66 0.765274
Target:  5'- cUCGGugauGCgGGCCAGccgcaGGCCGucggACGgCACGCa -3'
miRNA:   3'- -GGCC----UG-CCGGUC-----CCGGU----UGCgGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.