miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 103390 0.66 0.774074
Target:  5'- gCGGG-GGUagaugaGGGGCaccacgucgggCAGCGCCGCGUg -3'
miRNA:   3'- gGCCUgCCGg-----UCCCG-----------GUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 12742 0.66 0.773199
Target:  5'- cCCGGucCGcuaCCAGGagcugccgcucuuGCCGcCGCCGCGCu -3'
miRNA:   3'- -GGCCu-GCc--GGUCC-------------CGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 115193 0.66 0.774074
Target:  5'- gCCGG-CGGUCGa-GCCGGCGUaGCGCc -3'
miRNA:   3'- -GGCCuGCCGGUccCGGUUGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 123512 0.66 0.777564
Target:  5'- gCCGGGCuGCCGgccugcagcugguucGGGCaCAcGCGCUACaGCc -3'
miRNA:   3'- -GGCCUGcCGGU---------------CCCG-GU-UGCGGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 101651 0.66 0.774074
Target:  5'- gCGGGCGGgCGGcGGUUAgcccguccgaaACGCCggcggaGCGCg -3'
miRNA:   3'- gGCCUGCCgGUC-CCGGU-----------UGCGG------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 116906 0.66 0.765274
Target:  5'- uCCGG-CGGCC-GGuCCGGCGUCG-GCu -3'
miRNA:   3'- -GGCCuGCCGGuCCcGGUUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 42644 0.66 0.765274
Target:  5'- gCGGagucGCGGCCGaaGCCGacgGCGCCGCcgGCa -3'
miRNA:   3'- gGCC----UGCCGGUccCGGU---UGCGGUG--CG- -5'
11003 5' -61.7 NC_002794.1 + 124497 0.66 0.75637
Target:  5'- gCCGGAuggagucgcguCGGCCgcgagacaAGGagccGCCGACGCUGgCGCu -3'
miRNA:   3'- -GGCCU-----------GCCGG--------UCC----CGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 89934 0.66 0.75637
Target:  5'- gCGGGCgccGGCUucucGGGaGCCGACGUCGagGCg -3'
miRNA:   3'- gGCCUG---CCGG----UCC-CGGUUGCGGUg-CG- -5'
11003 5' -61.7 NC_002794.1 + 76342 0.66 0.75637
Target:  5'- cCCGG-CGGCCGGGaGUcgCAACGaCUcgACGUc -3'
miRNA:   3'- -GGCCuGCCGGUCC-CG--GUUGC-GG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 149969 0.66 0.75637
Target:  5'- gCCGaccugccGCGGaCCGGcGGCCGcuaucUGCCGCGCu -3'
miRNA:   3'- -GGCc------UGCC-GGUC-CCGGUu----GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 188949 0.66 0.75637
Target:  5'- uCCGGGCGuGCgCAGGuuCAGguCCACGCc -3'
miRNA:   3'- -GGCCUGC-CG-GUCCcgGUUgcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 93850 0.66 0.75637
Target:  5'- aUGGACGGCCGcGGCgGcgaGCCGCcCg -3'
miRNA:   3'- gGCCUGCCGGUcCCGgUug-CGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 65737 0.66 0.765274
Target:  5'- gCCGucCGGCCuccgacGGCCccGCGCCGcCGCc -3'
miRNA:   3'- -GGCcuGCCGGuc----CCGGu-UGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 8305 0.66 0.765274
Target:  5'- -aGGAgGGCgaAGGcGgCAcCGCCGCGCc -3'
miRNA:   3'- ggCCUgCCGg-UCC-CgGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 121016 0.66 0.765274
Target:  5'- -aGGGuCGGCCucccaAGaGGCCGGagaGCgGCGCg -3'
miRNA:   3'- ggCCU-GCCGG-----UC-CCGGUUg--CGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 139892 0.66 0.765274
Target:  5'- cUCGGugauGCgGGCCAGccgcaGGCCGucggACGgCACGCa -3'
miRNA:   3'- -GGCC----UG-CCGGUC-----CCGGU----UGCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 145937 0.66 0.765274
Target:  5'- gCCGGcgagaGCGGuUCGGGaGUCGcgaGCGCCcaGCGCg -3'
miRNA:   3'- -GGCC-----UGCC-GGUCC-CGGU---UGCGG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 24064 0.66 0.765274
Target:  5'- cCCGGACcacacccguGcGCCcGGGCgGGCGUCGcCGUa -3'
miRNA:   3'- -GGCCUG---------C-CGGuCCCGgUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 156014 0.66 0.765274
Target:  5'- aCGGG-GGUCucauGGGUCGcagccgucGCGUCGCGCg -3'
miRNA:   3'- gGCCUgCCGGu---CCCGGU--------UGCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.