Results 21 - 40 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11003 | 5' | -61.7 | NC_002794.1 | + | 150601 | 0.76 | 0.234336 |
Target: 5'- -aGGACGGCCGGGcGCCGGCuCUGCGg -3' miRNA: 3'- ggCCUGCCGGUCC-CGGUUGcGGUGCg -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 102071 | 0.76 | 0.245181 |
Target: 5'- gCCGGGCGaccuGCCGcGGGCCGACgaGCCGcCGCc -3' miRNA: 3'- -GGCCUGC----CGGU-CCCGGUUG--CGGU-GCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 95779 | 0.76 | 0.262226 |
Target: 5'- aCGG-CGGCCGGGGCgagaGGCGCgGCGg -3' miRNA: 3'- gGCCuGCCGGUCCCGg---UUGCGgUGCg -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 114180 | 0.76 | 0.245181 |
Target: 5'- gCUGGuuGGCCAGGcGCagCGGCGCCACGg -3' miRNA: 3'- -GGCCugCCGGUCC-CG--GUUGCGGUGCg -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 186287 | 0.76 | 0.234336 |
Target: 5'- gCGGcaccGCGGCCAGgcGGCCGGuCGCCGCGg -3' miRNA: 3'- gGCC----UGCCGGUC--CCGGUU-GCGGUGCg -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 126274 | 0.76 | 0.262226 |
Target: 5'- gCUGG-CGGCgCuGGGCUugcuguGCGCCGCGCg -3' miRNA: 3'- -GGCCuGCCG-GuCCCGGu-----UGCGGUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 52062 | 0.76 | 0.256439 |
Target: 5'- uCCGaGACGGCCAucGCCGaauGCGCgGCGCa -3' miRNA: 3'- -GGC-CUGCCGGUccCGGU---UGCGgUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 105204 | 0.76 | 0.229066 |
Target: 5'- cUCGGacGCGGUgaucagggucgaCAGGGCCGugcgcgGCGCCACGCu -3' miRNA: 3'- -GGCC--UGCCG------------GUCCCGGU------UGCGGUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 44194 | 0.76 | 0.256439 |
Target: 5'- uCCGGGCGaaGCC-GGGCCGACGUCcggcucggGCGCc -3' miRNA: 3'- -GGCCUGC--CGGuCCCGGUUGCGG--------UGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 17945 | 0.76 | 0.260479 |
Target: 5'- aCCuGGCGGCCAcccgcgacucgcccGGGCCGugaGCCugGCg -3' miRNA: 3'- -GGcCUGCCGGU--------------CCCGGUug-CGGugCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 61517 | 0.75 | 0.268118 |
Target: 5'- gCCGGACGgcggccGCCGGcGGCCGccgcgaagacgACGCCGcCGCg -3' miRNA: 3'- -GGCCUGC------CGGUC-CCGGU-----------UGCGGU-GCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 188249 | 0.75 | 0.270504 |
Target: 5'- aCCGGcgGCGGCgGcgguagcggcGGGCCGgguagcggaugcaggGCGCCGCGCg -3' miRNA: 3'- -GGCC--UGCCGgU----------CCCGGU---------------UGCGGUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 68762 | 0.75 | 0.280222 |
Target: 5'- gCCGGGCcGCCGGGGCgCcgGACGCCcggcucucGCGCc -3' miRNA: 3'- -GGCCUGcCGGUCCCG-G--UUGCGG--------UGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 183164 | 0.75 | 0.273511 |
Target: 5'- gCCGGGCugcccgagccGGUCGGGGaCCGAgacgcgcCGCCACGCc -3' miRNA: 3'- -GGCCUG----------CCGGUCCC-GGUU-------GCGGUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 102685 | 0.75 | 0.270504 |
Target: 5'- aCCGGgugucguacgugcugACGGCC-GGGCCGccggacgggcGCGCCAaCGCg -3' miRNA: 3'- -GGCC---------------UGCCGGuCCCGGU----------UGCGGU-GCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 91034 | 0.75 | 0.274116 |
Target: 5'- uCUGGGCGGCCcucGGGGUgGACGgggCGCGCg -3' miRNA: 3'- -GGCCUGCCGG---UCCCGgUUGCg--GUGCG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 33454 | 0.75 | 0.286435 |
Target: 5'- cUCGGGCGGCCGccGGacgcGCCcACGCCGCuGCa -3' miRNA: 3'- -GGCCUGCCGGU--CC----CGGuUGCGGUG-CG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 112228 | 0.75 | 0.286435 |
Target: 5'- uCCaGGGCGuCCAGGGCCGccgcgaACGCCGCcgGCg -3' miRNA: 3'- -GG-CCUGCcGGUCCCGGU------UGCGGUG--CG- -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 126380 | 0.75 | 0.292756 |
Target: 5'- gUGGGC-GCCGGGGCCuGCGCgGCGg -3' miRNA: 3'- gGCCUGcCGGUCCCGGuUGCGgUGCg -5' |
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11003 | 5' | -61.7 | NC_002794.1 | + | 98338 | 0.75 | 0.280222 |
Target: 5'- gCuGACGGCCAucuacgaccGGCCGAuCGCCGCGCg -3' miRNA: 3'- gGcCUGCCGGUc--------CCGGUU-GCGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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