miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 100821 0.89 0.032745
Target:  5'- gCCGGGCGGCgGGGGCCGGCaGCCGgGCu -3'
miRNA:   3'- -GGCCUGCCGgUCCCGGUUG-CGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 41867 0.81 0.117976
Target:  5'- gCCGGGCagGGCCGGGcGCUGccACGCCACGUa -3'
miRNA:   3'- -GGCCUG--CCGGUCC-CGGU--UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 184503 0.8 0.136491
Target:  5'- cCCGGGCGGCgC-GGGCCccgcGCGCgGCGCg -3'
miRNA:   3'- -GGCCUGCCG-GuCCCGGu---UGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 70220 0.8 0.143235
Target:  5'- cCCGGACGGUCGGgcgggcGGCCGGcCGCCcCGCa -3'
miRNA:   3'- -GGCCUGCCGGUC------CCGGUU-GCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 76818 0.8 0.14672
Target:  5'- aCCGGACGucacGCCAGcGGCCGGCGaugCGCGCc -3'
miRNA:   3'- -GGCCUGC----CGGUC-CCGGUUGCg--GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 37880 0.79 0.169296
Target:  5'- cUCGGGCGGCgGGGGCgGugGCgGCGg -3'
miRNA:   3'- -GGCCUGCCGgUCCCGgUugCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 114136 0.78 0.181714
Target:  5'- gCCGc-CGGCCAGGGCgcgcaGGCGCCGCGUc -3'
miRNA:   3'- -GGCcuGCCGGUCCCGg----UUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 189575 0.78 0.190434
Target:  5'- gUCGGcCGGCCcGGGCCGGCGCCccuuaGCc -3'
miRNA:   3'- -GGCCuGCCGGuCCCGGUUGCGGug---CG- -5'
11003 5' -61.7 NC_002794.1 + 107222 0.78 0.190434
Target:  5'- gCCGGGCGGCgcgcgaCGGGGgCGGCGUCGCGg -3'
miRNA:   3'- -GGCCUGCCG------GUCCCgGUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 102157 0.78 0.194931
Target:  5'- gCGGcguGCGcGCCGGGGCCAuCGUgGCGCg -3'
miRNA:   3'- gGCC---UGC-CGGUCCCGGUuGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 102409 0.77 0.19952
Target:  5'- uCCGcGacGCGGCCGuGGCCGAggcCGCCACGCg -3'
miRNA:   3'- -GGC-C--UGCCGGUcCCGGUU---GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 107150 0.77 0.19952
Target:  5'- gUCGGcgccccCGGCgAGGGCCGcCGCUACGCg -3'
miRNA:   3'- -GGCCu-----GCCGgUCCCGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 118256 0.77 0.208981
Target:  5'- gCUGGAgguCGGCCGGGGCggCGGCGCCgGCGUc -3'
miRNA:   3'- -GGCCU---GCCGGUCCCG--GUUGCGG-UGCG- -5'
11003 5' -61.7 NC_002794.1 + 116142 0.77 0.213856
Target:  5'- gCGGcgGCGGCCAGGGCCugcacCGCCucCGUg -3'
miRNA:   3'- gGCC--UGCCGGUCCCGGuu---GCGGu-GCG- -5'
11003 5' -61.7 NC_002794.1 + 92548 0.77 0.218827
Target:  5'- aCCGcGACGa--GGuGGCCGGCGCCACGCa -3'
miRNA:   3'- -GGC-CUGCcggUC-CCGGUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 14626 0.77 0.218827
Target:  5'- gCCGGAgacggGGCCGGGcacggagacGCCGGCGCCGCGg -3'
miRNA:   3'- -GGCCUg----CCGGUCC---------CGGUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 91228 0.77 0.218827
Target:  5'- gCGGACGGCgCGGcGGCCGucGgGCUGCGCu -3'
miRNA:   3'- gGCCUGCCG-GUC-CCGGU--UgCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 105204 0.76 0.229066
Target:  5'- cUCGGacGCGGUgaucagggucgaCAGGGCCGugcgcgGCGCCACGCu -3'
miRNA:   3'- -GGCC--UGCCG------------GUCCCGGU------UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 186287 0.76 0.234336
Target:  5'- gCGGcaccGCGGCCAGgcGGCCGGuCGCCGCGg -3'
miRNA:   3'- gGCC----UGCCGGUC--CCGGUU-GCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 150601 0.76 0.234336
Target:  5'- -aGGACGGCCGGGcGCCGGCuCUGCGg -3'
miRNA:   3'- ggCCUGCCGGUCC-CGGUUGcGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.