miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 102071 0.76 0.245181
Target:  5'- gCCGGGCGaccuGCCGcGGGCCGACgaGCCGcCGCc -3'
miRNA:   3'- -GGCCUGC----CGGU-CCCGGUUG--CGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 114180 0.76 0.245181
Target:  5'- gCUGGuuGGCCAGGcGCagCGGCGCCACGg -3'
miRNA:   3'- -GGCCugCCGGUCC-CG--GUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 32590 0.76 0.250758
Target:  5'- gCCGGGgccggGGCCGGGGCCGGgGCCGgGg -3'
miRNA:   3'- -GGCCUg----CCGGUCCCGGUUgCGGUgCg -5'
11003 5' -61.7 NC_002794.1 + 52062 0.76 0.256439
Target:  5'- uCCGaGACGGCCAucGCCGaauGCGCgGCGCa -3'
miRNA:   3'- -GGC-CUGCCGGUccCGGU---UGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 192632 0.76 0.256439
Target:  5'- gUCGGGCGGCCGcuccaGCCGcgcCGCCGCGCg -3'
miRNA:   3'- -GGCCUGCCGGUcc---CGGUu--GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 118647 0.76 0.256439
Target:  5'- cUCGG-CGGCCAgcucguccguGGGCgCGACGCC-CGCg -3'
miRNA:   3'- -GGCCuGCCGGU----------CCCG-GUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 44194 0.76 0.256439
Target:  5'- uCCGGGCGaaGCC-GGGCCGACGUCcggcucggGCGCc -3'
miRNA:   3'- -GGCCUGC--CGGuCCCGGUUGCGG--------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 17945 0.76 0.260479
Target:  5'- aCCuGGCGGCCAcccgcgacucgcccGGGCCGugaGCCugGCg -3'
miRNA:   3'- -GGcCUGCCGGU--------------CCCGGUug-CGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 126274 0.76 0.262226
Target:  5'- gCUGG-CGGCgCuGGGCUugcuguGCGCCGCGCg -3'
miRNA:   3'- -GGCCuGCCG-GuCCCGGu-----UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 95779 0.76 0.262226
Target:  5'- aCGG-CGGCCGGGGCgagaGGCGCgGCGg -3'
miRNA:   3'- gGCCuGCCGGUCCCGg---UUGCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 61517 0.75 0.268118
Target:  5'- gCCGGACGgcggccGCCGGcGGCCGccgcgaagacgACGCCGcCGCg -3'
miRNA:   3'- -GGCCUGC------CGGUC-CCGGU-----------UGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 102685 0.75 0.270504
Target:  5'- aCCGGgugucguacgugcugACGGCC-GGGCCGccggacgggcGCGCCAaCGCg -3'
miRNA:   3'- -GGCC---------------UGCCGGuCCCGGU----------UGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 188249 0.75 0.270504
Target:  5'- aCCGGcgGCGGCgGcgguagcggcGGGCCGgguagcggaugcaggGCGCCGCGCg -3'
miRNA:   3'- -GGCC--UGCCGgU----------CCCGGU---------------UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 183164 0.75 0.273511
Target:  5'- gCCGGGCugcccgagccGGUCGGGGaCCGAgacgcgcCGCCACGCc -3'
miRNA:   3'- -GGCCUG----------CCGGUCCC-GGUU-------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 91034 0.75 0.274116
Target:  5'- uCUGGGCGGCCcucGGGGUgGACGgggCGCGCg -3'
miRNA:   3'- -GGCCUGCCGG---UCCCGgUUGCg--GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 882 0.75 0.279606
Target:  5'- gUCGGcgugcgcGCgGGCCGGGuGCCAACGCCGCu- -3'
miRNA:   3'- -GGCC-------UG-CCGGUCC-CGGUUGCGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 68762 0.75 0.280222
Target:  5'- gCCGGGCcGCCGGGGCgCcgGACGCCcggcucucGCGCc -3'
miRNA:   3'- -GGCCUGcCGGUCCCG-G--UUGCGG--------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 98338 0.75 0.280222
Target:  5'- gCuGACGGCCAucuacgaccGGCCGAuCGCCGCGCg -3'
miRNA:   3'- gGcCUGCCGGUc--------CCGGUU-GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 33454 0.75 0.286435
Target:  5'- cUCGGGCGGCCGccGGacgcGCCcACGCCGCuGCa -3'
miRNA:   3'- -GGCCUGCCGGU--CC----CGGuUGCGGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 112228 0.75 0.286435
Target:  5'- uCCaGGGCGuCCAGGGCCGccgcgaACGCCGCcgGCg -3'
miRNA:   3'- -GG-CCUGCcGGUCCCGGU------UGCGGUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.