miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 126380 0.75 0.292756
Target:  5'- gUGGGC-GCCGGGGCCuGCGCgGCGg -3'
miRNA:   3'- gGCCUGcCGGUCCCGGuUGCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 92319 0.75 0.297245
Target:  5'- gCGGGCGGCgGGGGCCcgggcgggcggcucGGCGUCaACGUc -3'
miRNA:   3'- gGCCUGCCGgUCCCGG--------------UUGCGG-UGCG- -5'
11003 5' -61.7 NC_002794.1 + 105411 0.75 0.299185
Target:  5'- gCGGAucuCGGCCuccagGGuGGCCGcCGCCGCGCc -3'
miRNA:   3'- gGCCU---GCCGG-----UC-CCGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 117211 0.74 0.305065
Target:  5'- cCCGGGCGGCUccGGCCGcgucaggGCGaCCgACGCg -3'
miRNA:   3'- -GGCCUGCCGGucCCGGU-------UGC-GG-UGCG- -5'
11003 5' -61.7 NC_002794.1 + 120056 0.74 0.305723
Target:  5'- gCGGugGCGGCCgcGGaGGCCGACGCgGCGg -3'
miRNA:   3'- gGCC--UGCCGG--UC-CCGGUUGCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 47958 0.74 0.305723
Target:  5'- cCCGGcgcCGGCU-GGGCgAcCGCCGCGCg -3'
miRNA:   3'- -GGCCu--GCCGGuCCCGgUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 61820 0.74 0.305723
Target:  5'- uCCGG-CGGCCgccGGcGGCCGGCGUCAcucCGCu -3'
miRNA:   3'- -GGCCuGCCGG---UC-CCGGUUGCGGU---GCG- -5'
11003 5' -61.7 NC_002794.1 + 154400 0.74 0.319127
Target:  5'- uUCGcGugGuGCCGGuGGCCAGCGCU-CGCa -3'
miRNA:   3'- -GGC-CugC-CGGUC-CCGGUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 35814 0.74 0.319127
Target:  5'- cCCGGAccCGGUUuccGGGCCGcCGCCACGa -3'
miRNA:   3'- -GGCCU--GCCGGu--CCCGGUuGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 181402 0.74 0.319127
Target:  5'- cCCGGGcCGGCCGccGCCAcCGCCAUGUc -3'
miRNA:   3'- -GGCCU-GCCGGUccCGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 181749 0.74 0.325992
Target:  5'- gCGGcCGGCCAGcccgcugacGCCGaugGCGCCGCGCc -3'
miRNA:   3'- gGCCuGCCGGUCc--------CGGU---UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 48873 0.74 0.325992
Target:  5'- cCCGucGGCGGCCAGguggcaGGCCAGCGUUGcCGCa -3'
miRNA:   3'- -GGC--CUGCCGGUC------CCGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 42599 0.74 0.332967
Target:  5'- gCGcGGCGGCCGGGaGCgggcucucuCGACGaCCGCGCu -3'
miRNA:   3'- gGC-CUGCCGGUCC-CG---------GUUGC-GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 83950 0.74 0.332967
Target:  5'- cCUGGACcGCCuGGGCCGccuggaGCGCCugGa -3'
miRNA:   3'- -GGCCUGcCGGuCCCGGU------UGCGGugCg -5'
11003 5' -61.7 NC_002794.1 + 43306 0.74 0.332967
Target:  5'- cCCGGGCGGUCuuGGUCugcucgaaGACGaCCACGCa -3'
miRNA:   3'- -GGCCUGCCGGucCCGG--------UUGC-GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 58082 0.74 0.332967
Target:  5'- aCGGGCGGCCcGGcGCCcGCGCUcgacCGCu -3'
miRNA:   3'- gGCCUGCCGGuCC-CGGuUGCGGu---GCG- -5'
11003 5' -61.7 NC_002794.1 + 126083 0.74 0.335787
Target:  5'- aCCGGccuGCGGCCGaccgacuggcuuccGGCCcugGGCGCCGCGCu -3'
miRNA:   3'- -GGCC---UGCCGGUc-------------CCGG---UUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 143431 0.74 0.34005
Target:  5'- uCCGGAaGGCCAGcaugacGGUCAcgagccCGCCGCGCg -3'
miRNA:   3'- -GGCCUgCCGGUC------CCGGUu-----GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 126592 0.73 0.345795
Target:  5'- aCCGGGacugagcgccgaGGCCGGcGCCGACGUCGCGg -3'
miRNA:   3'- -GGCCUg-----------CCGGUCcCGGUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 91602 0.73 0.347242
Target:  5'- gCUGGugcgcGCGGCCgAGGGCC-ACGCCgaccuccuGCGCc -3'
miRNA:   3'- -GGCC-----UGCCGG-UCCCGGuUGCGG--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.