miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 114027 0.66 0.765274
Target:  5'- aCaGGCgGGgCAGcGGCCGcccguaguCGCCGCGCa -3'
miRNA:   3'- gGcCUG-CCgGUC-CCGGUu-------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 107333 0.66 0.765274
Target:  5'- uUCGGcuuCGGuCCGuGGGuCCGGuCGCCGCGa -3'
miRNA:   3'- -GGCCu--GCC-GGU-CCC-GGUU-GCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 133465 0.66 0.765274
Target:  5'- gCGGACGGgUAugcGGGCgCGACuCUugGCu -3'
miRNA:   3'- gGCCUGCCgGU---CCCG-GUUGcGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 81596 0.66 0.765274
Target:  5'- aCGGacccGCGGCCGGagucGCgGACGagCACGCg -3'
miRNA:   3'- gGCC----UGCCGGUCc---CGgUUGCg-GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 121219 0.66 0.75637
Target:  5'- -gGGGCGGCCGccGCCGcuacaguCGCCGCuGCc -3'
miRNA:   3'- ggCCUGCCGGUccCGGUu------GCGGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 106247 0.66 0.75637
Target:  5'- gCaGACcGCCGcgaaccGGCgAGCGCCGCGCg -3'
miRNA:   3'- gGcCUGcCGGUc-----CCGgUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 110876 0.66 0.75637
Target:  5'- uCCGGcACGuucuccagguGCC-GGGCCAGCaagaGCCGcCGCc -3'
miRNA:   3'- -GGCC-UGC----------CGGuCCCGGUUG----CGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 149662 0.66 0.75637
Target:  5'- -aGGA-GGCCgagcgGGGGC--GCGUCGCGCu -3'
miRNA:   3'- ggCCUgCCGG-----UCCCGguUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 94069 0.66 0.75637
Target:  5'- gCGGGgGGCgAGGGCaccuACGaCCugucgGCGCu -3'
miRNA:   3'- gGCCUgCCGgUCCCGgu--UGC-GG-----UGCG- -5'
11003 5' -61.7 NC_002794.1 + 49017 0.66 0.75637
Target:  5'- gCCGcGGCGGCCGcGGCgu-CGUCcgGCGCg -3'
miRNA:   3'- -GGC-CUGCCGGUcCCGguuGCGG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 124497 0.66 0.75637
Target:  5'- gCCGGAuggagucgcguCGGCCgcgagacaAGGagccGCCGACGCUGgCGCu -3'
miRNA:   3'- -GGCCU-----------GCCGG--------UCC----CGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 93850 0.66 0.75637
Target:  5'- aUGGACGGCCGcGGCgGcgaGCCGCcCg -3'
miRNA:   3'- gGCCUGCCGGUcCCGgUug-CGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 188949 0.66 0.75637
Target:  5'- uCCGGGCGuGCgCAGGuuCAGguCCACGCc -3'
miRNA:   3'- -GGCCUGC-CG-GUCCcgGUUgcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 149969 0.66 0.75637
Target:  5'- gCCGaccugccGCGGaCCGGcGGCCGcuaucUGCCGCGCu -3'
miRNA:   3'- -GGCc------UGCC-GGUC-CCGGUu----GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 76342 0.66 0.75637
Target:  5'- cCCGG-CGGCCGGGaGUcgCAACGaCUcgACGUc -3'
miRNA:   3'- -GGCCuGCCGGUCC-CG--GUUGC-GG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 89934 0.66 0.75637
Target:  5'- gCGGGCgccGGCUucucGGGaGCCGACGUCGagGCg -3'
miRNA:   3'- gGCCUG---CCGG----UCC-CGGUUGCGGUg-CG- -5'
11003 5' -61.7 NC_002794.1 + 180252 0.66 0.755474
Target:  5'- aCCgGGACGuguuguccgcuucGCCGGucuccucgcGGCCcGCGCCGcCGCa -3'
miRNA:   3'- -GG-CCUGC-------------CGGUC---------CCGGuUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 184324 0.66 0.755474
Target:  5'- uCCGcucACGGCCGGGGaCAGCGacaggguCCGCaGCu -3'
miRNA:   3'- -GGCc--UGCCGGUCCCgGUUGC-------GGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 179184 0.66 0.754577
Target:  5'- cCCGGACcaccgcaggcacGCCccGGCCGGCGgCACGa -3'
miRNA:   3'- -GGCCUGc-----------CGGucCCGGUUGCgGUGCg -5'
11003 5' -61.7 NC_002794.1 + 106040 0.66 0.75368
Target:  5'- gCUGGacgcGCGGCUGaacuucgucaacguGGGCCGcCGgCACGCg -3'
miRNA:   3'- -GGCC----UGCCGGU--------------CCCGGUuGCgGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.