miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 58007 0.66 0.752781
Target:  5'- uUCGucGCcGCCGGGGCCGccgccggcgaaccCGCCGCGCc -3'
miRNA:   3'- -GGCc-UGcCGGUCCCGGUu------------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 151294 0.66 0.74737
Target:  5'- aCGGaACGGCUucgucgucaaGGuGGCCAACaCCAucCGCg -3'
miRNA:   3'- gGCC-UGCCGG----------UC-CCGGUUGcGGU--GCG- -5'
11003 5' -61.7 NC_002794.1 + 56192 0.66 0.74737
Target:  5'- aCCGGgccGCGG-CAGGcGUaGGCGCCcCGCa -3'
miRNA:   3'- -GGCC---UGCCgGUCC-CGgUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 13784 0.66 0.74737
Target:  5'- cCCGGGUGGCUccGGCCGucuuCGCgACGg -3'
miRNA:   3'- -GGCCUGCCGGucCCGGUu---GCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 140 0.66 0.74737
Target:  5'- cCCgGGACcGCCgcaGGGGCgCAccagcACGCC-CGCg -3'
miRNA:   3'- -GG-CCUGcCGG---UCCCG-GU-----UGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 43667 0.66 0.74737
Target:  5'- gCCGGGCucucgGGCCcGGGCgCGGa-CCAUGCc -3'
miRNA:   3'- -GGCCUG-----CCGGuCCCG-GUUgcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 40339 0.66 0.74737
Target:  5'- gCGGACGcGCCAccGgCGGCGCCGCc- -3'
miRNA:   3'- gGCCUGC-CGGUccCgGUUGCGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 54233 0.66 0.74737
Target:  5'- cUCGGaugaaGCGGCCGagcgcGcGGuCCAcgGCGCCGCGUc -3'
miRNA:   3'- -GGCC-----UGCCGGU-----C-CC-GGU--UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 120996 0.66 0.74737
Target:  5'- gCGG-CGGC--GGGCCAugGCCGa-- -3'
miRNA:   3'- gGCCuGCCGguCCCGGUugCGGUgcg -5'
11003 5' -61.7 NC_002794.1 + 189117 0.66 0.74737
Target:  5'- aCGGGCcaGGUgguccaagugCGGGGCCGccaGCGCCAgacucuccCGCg -3'
miRNA:   3'- gGCCUG--CCG----------GUCCCGGU---UGCGGU--------GCG- -5'
11003 5' -61.7 NC_002794.1 + 185914 0.66 0.74737
Target:  5'- aCCGGGCcccucGCCAccgccGGCCAccCGCCAgGCu -3'
miRNA:   3'- -GGCCUGc----CGGUc----CCGGUu-GCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 99246 0.66 0.746465
Target:  5'- gCCGGACcccgccgcggaggGGCuCGGGGgCucCGgCGCGCu -3'
miRNA:   3'- -GGCCUG-------------CCG-GUCCCgGuuGCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 81776 0.66 0.744653
Target:  5'- uCCGGcACGGCCGuccgcgagauuuccGcuGCCucaGCCGCGCg -3'
miRNA:   3'- -GGCC-UGCCGGU--------------Cc-CGGuugCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 116448 0.66 0.741927
Target:  5'- aCGGuggcgaugacgaagaGCGGCCGguucuuGGuGCCGGCGUaGCGCa -3'
miRNA:   3'- gGCC---------------UGCCGGU------CC-CGGUUGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 186764 0.66 0.738282
Target:  5'- -gGGGCaGGCCAGGcGCUccgacACGUagCGCGCg -3'
miRNA:   3'- ggCCUG-CCGGUCC-CGGu----UGCG--GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 42049 0.66 0.738282
Target:  5'- gCGGagcGCGuGCCAGaugauguuGGCCGACugGCCGCGg -3'
miRNA:   3'- gGCC---UGC-CGGUC--------CCGGUUG--CGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 44507 0.66 0.738282
Target:  5'- aCGG-CGGCCcagaccGGGCCcgUGUC-CGCg -3'
miRNA:   3'- gGCCuGCCGGu-----CCCGGuuGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 120527 0.66 0.738282
Target:  5'- gCGG-UGGCCcccGGGCUGACcaGCCugGUc -3'
miRNA:   3'- gGCCuGCCGGu--CCCGGUUG--CGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 141558 0.66 0.738282
Target:  5'- uCCGccacccGCGGCCGcGGCCuccgugaucauGACGCC-CGCg -3'
miRNA:   3'- -GGCc-----UGCCGGUcCCGG-----------UUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 143265 0.66 0.738282
Target:  5'- -aGGAaGGCCcGGcCCGGCGCCGgcCGCu -3'
miRNA:   3'- ggCCUgCCGGuCCcGGUUGCGGU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.