miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 40520 0.66 0.737368
Target:  5'- gCCGccGACGcGCCgacgggagacgagGGGGCCGGCGgCAUGa -3'
miRNA:   3'- -GGC--CUGC-CGG-------------UCCCGGUUGCgGUGCg -5'
11003 5' -61.7 NC_002794.1 + 18799 0.66 0.737368
Target:  5'- aCGGccccgcCGGCCAacGGGUCGGCGaCCucggccgGCGCg -3'
miRNA:   3'- gGCCu-----GCCGGU--CCCGGUUGC-GG-------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 79276 0.66 0.737368
Target:  5'- uCCGGGuCGGCCGcgucuuuuccugcGuGGCCgAGCGCCuCGa -3'
miRNA:   3'- -GGCCU-GCCGGU-------------C-CCGG-UUGCGGuGCg -5'
11003 5' -61.7 NC_002794.1 + 16064 0.66 0.729113
Target:  5'- -gGGACuGCUgcucaccaucGGGGUCGugaGCGUCACGCu -3'
miRNA:   3'- ggCCUGcCGG----------UCCCGGU---UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 63165 0.66 0.729113
Target:  5'- gCUGcACGGCCGaGGCCGcgaaGCGgUCGCGCu -3'
miRNA:   3'- -GGCcUGCCGGUcCCGGU----UGC-GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 135488 0.66 0.729113
Target:  5'- gCCGucGACGcGCgCGGGcCCGAUGCC-CGCa -3'
miRNA:   3'- -GGC--CUGC-CG-GUCCcGGUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 151221 0.66 0.729113
Target:  5'- aCCGGGucuugGGCCAGGGCUAccggcucacCGUCGUGCu -3'
miRNA:   3'- -GGCCUg----CCGGUCCCGGUu--------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 149506 0.66 0.729113
Target:  5'- -gGGAUGGUgaCGGGGUCGuCGCCGggaGCg -3'
miRNA:   3'- ggCCUGCCG--GUCCCGGUuGCGGUg--CG- -5'
11003 5' -61.7 NC_002794.1 + 41953 0.66 0.729113
Target:  5'- cUCGGcgugcGCGGCCuggaaGGUCGGCuCCACGCc -3'
miRNA:   3'- -GGCC-----UGCCGGuc---CCGGUUGcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 157669 0.66 0.729113
Target:  5'- gCUGG-CGGCUuGGGCC---GCUugGCg -3'
miRNA:   3'- -GGCCuGCCGGuCCCGGuugCGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 142812 0.66 0.729113
Target:  5'- gCCGGGuCGGCCucGuuCAACGCgUGCGCg -3'
miRNA:   3'- -GGCCU-GCCGGucCcgGUUGCG-GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 94230 0.66 0.729113
Target:  5'- aCGGGCGGgC-GGGCCggUGacggaCAUGUa -3'
miRNA:   3'- gGCCUGCCgGuCCCGGuuGCg----GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 86495 0.66 0.728191
Target:  5'- uCCGGAcCGaGCCGGGaCgGAUgcuccggGCCGCGCc -3'
miRNA:   3'- -GGCCU-GC-CGGUCCcGgUUG-------CGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 86327 0.66 0.728191
Target:  5'- uCCGGAcCGaGCCGGGaCgGAUgcuccggGCCGCGCc -3'
miRNA:   3'- -GGCCU-GC-CGGUCCcGgUUG-------CGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 20392 0.66 0.728191
Target:  5'- gCGGuGCGGCgggaccgggagCGGGGCCAcACGgucuaccCCGCGCc -3'
miRNA:   3'- gGCC-UGCCG-----------GUCCCGGU-UGC-------GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 99785 0.66 0.726347
Target:  5'- gCCGGcgucgacuacgagcGCGcGCCgcGGGcGCCGGCGCCGuCGg -3'
miRNA:   3'- -GGCC--------------UGC-CGG--UCC-CGGUUGCGGU-GCg -5'
11003 5' -61.7 NC_002794.1 + 12031 0.67 0.723575
Target:  5'- cCCGGGCGuccgcgccuuccccuGCCGguaucucuGGGCCG-CGCCGC-Cg -3'
miRNA:   3'- -GGCCUGC---------------CGGU--------CCCGGUuGCGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 128764 0.67 0.723575
Target:  5'- gCGGucCGGUCAGGGCCggguggacucccgagAgcaugaauccGCGgCACGCg -3'
miRNA:   3'- gGCCu-GCCGGUCCCGG---------------U----------UGCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 21001 0.67 0.723575
Target:  5'- aCCGcGGCGGCCAcaGCCAcaGCGacacccucgccacuaCCACGUa -3'
miRNA:   3'- -GGC-CUGCCGGUccCGGU--UGC---------------GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 113368 0.67 0.71987
Target:  5'- cCCGGaACGGgUGcGGGCCGcCGUCGUGCa -3'
miRNA:   3'- -GGCC-UGCCgGU-CCCGGUuGCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.