miRNA display CGI


Results 1 - 20 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 50 0.67 0.710562
Target:  5'- cUCGGACGaac--GGCCGACGCC-CGCc -3'
miRNA:   3'- -GGCCUGCcggucCCGGUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 140 0.66 0.74737
Target:  5'- cCCgGGACcGCCgcaGGGGCgCAccagcACGCC-CGCg -3'
miRNA:   3'- -GG-CCUGcCGG---UCCCG-GU-----UGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 285 0.67 0.691778
Target:  5'- aCGG-CGGCCcuGGcgcGCCgAACGCCGgGCc -3'
miRNA:   3'- gGCCuGCCGGu-CC---CGG-UUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 807 0.68 0.622166
Target:  5'- uCCGGGCGGUCgggagGGGGCCuuuuccuccggucccCGgCGCGUg -3'
miRNA:   3'- -GGCCUGCCGG-----UCCCGGuu-------------GCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 882 0.75 0.279606
Target:  5'- gUCGGcgugcgcGCgGGCCGGGuGCCAACGCCGCu- -3'
miRNA:   3'- -GGCC-------UG-CCGGUCC-CGGUUGCGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 8079 0.67 0.71987
Target:  5'- aCGGuguuccccAUGGCCAGGcCCAucucuaGCGCCACcgaGCg -3'
miRNA:   3'- gGCC--------UGCCGGUCCcGGU------UGCGGUG---CG- -5'
11003 5' -61.7 NC_002794.1 + 8305 0.66 0.765274
Target:  5'- -aGGAgGGCgaAGGcGgCAcCGCCGCGCc -3'
miRNA:   3'- ggCCUgCCGg-UCC-CgGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 10769 0.69 0.605911
Target:  5'- aCGG-CGGCguGGaGCUgcaguGCGCCAuCGCg -3'
miRNA:   3'- gGCCuGCCGguCC-CGGu----UGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 10889 0.68 0.615468
Target:  5'- aCGGGCGGgCGGaGGUguuuCGCCACGg -3'
miRNA:   3'- gGCCUGCCgGUC-CCGguu-GCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 11648 0.68 0.625037
Target:  5'- aCGGGCGGCCGacgacGcGGCCcGCcgGCCACa- -3'
miRNA:   3'- gGCCUGCCGGU-----C-CCGGuUG--CGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 12031 0.67 0.723575
Target:  5'- cCCGGGCGuccgcgccuuccccuGCCGguaucucuGGGCCG-CGCCGC-Cg -3'
miRNA:   3'- -GGCCUGC---------------CGGU--------CCCGGUuGCGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 12168 0.71 0.467532
Target:  5'- cCCGGAUcGUCGccGCCGACGCCGcCGCg -3'
miRNA:   3'- -GGCCUGcCGGUccCGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 12208 0.73 0.377085
Target:  5'- cUCGGACGuGCCGGcGGCgucggCGGCGCCggcgGCGCc -3'
miRNA:   3'- -GGCCUGC-CGGUC-CCG-----GUUGCGG----UGCG- -5'
11003 5' -61.7 NC_002794.1 + 12518 0.67 0.710562
Target:  5'- aCCGG-CGGCU-GGGUgGauuggaaggaACGCgGCGCg -3'
miRNA:   3'- -GGCCuGCCGGuCCCGgU----------UGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 12742 0.66 0.773199
Target:  5'- cCCGGucCGcuaCCAGGagcugccgcucuuGCCGcCGCCGCGCu -3'
miRNA:   3'- -GGCCu-GCc--GGUCC-------------CGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 12889 0.67 0.691778
Target:  5'- gCCGGACcacgacccGCUcgacuGGGCCGAguacCGCCugGCc -3'
miRNA:   3'- -GGCCUGc-------CGGu----CCCGGUU----GCGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 13097 0.65 0.780169
Target:  5'- cCCGGGggacgaggugcguuCGG-CGGGGU---CGCCGCGCg -3'
miRNA:   3'- -GGCCU--------------GCCgGUCCCGguuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 13784 0.66 0.74737
Target:  5'- cCCGGGUGGCUccGGCCGucuuCGCgACGg -3'
miRNA:   3'- -GGCCUGCCGGucCCGGUu---GCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 14565 0.69 0.558494
Target:  5'- gCGGGaggcgagcCGGCCGaccgaagcGGGCCGugGCgaGCGCg -3'
miRNA:   3'- gGCCU--------GCCGGU--------CCCGGUugCGg-UGCG- -5'
11003 5' -61.7 NC_002794.1 + 14626 0.77 0.218827
Target:  5'- gCCGGAgacggGGCCGGGcacggagacGCCGGCGCCGCGg -3'
miRNA:   3'- -GGCCUg----CCGGUCC---------CGGUUGCGGUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.