miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 15336 0.69 0.585903
Target:  5'- uCCGGACGGCguG-GCCAGauggaauCG-CACGCu -3'
miRNA:   3'- -GGCCUGCCGguCcCGGUU-------GCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 16064 0.66 0.729113
Target:  5'- -gGGACuGCUgcucaccaucGGGGUCGugaGCGUCACGCu -3'
miRNA:   3'- ggCCUGcCGG----------UCCCGGU---UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 17314 0.69 0.586853
Target:  5'- aCGGugacgACGGUCAGGccGCCGGCGuccccuccgacCCACGCc -3'
miRNA:   3'- gGCC-----UGCCGGUCC--CGGUUGC-----------GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 17945 0.76 0.260479
Target:  5'- aCCuGGCGGCCAcccgcgacucgcccGGGCCGugaGCCugGCg -3'
miRNA:   3'- -GGcCUGCCGGU--------------CCCGGUug-CGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 18716 0.67 0.681368
Target:  5'- uCCGGACGucggagccgacgaGCCGcc-CCAACGCCACGa -3'
miRNA:   3'- -GGCCUGC-------------CGGUcccGGUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 18799 0.66 0.737368
Target:  5'- aCGGccccgcCGGCCAacGGGUCGGCGaCCucggccgGCGCg -3'
miRNA:   3'- gGCCu-----GCCGGU--CCCGGUUGC-GG-------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 19497 0.68 0.648008
Target:  5'- aCCGacGACGGCggaggucgcgccgcuCGGaGcGCCGGCGCgGCGCg -3'
miRNA:   3'- -GGC--CUGCCG---------------GUC-C-CGGUUGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 19595 0.67 0.682316
Target:  5'- uCCGGccCGGCgAGcGGCCGA-GCCAC-Cg -3'
miRNA:   3'- -GGCCu-GCCGgUC-CCGGUUgCGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 19959 0.67 0.682316
Target:  5'- gCGGgcuucgagcuGCGGCCGcccuucGGGCUguccguccugguGGCGCUGCGCa -3'
miRNA:   3'- gGCC----------UGCCGGU------CCCGG------------UUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 20392 0.66 0.728191
Target:  5'- gCGGuGCGGCgggaccgggagCGGGGCCAcACGgucuaccCCGCGCc -3'
miRNA:   3'- gGCC-UGCCG-----------GUCCCGGU-UGC-------GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 21001 0.67 0.723575
Target:  5'- aCCGcGGCGGCCAcaGCCAcaGCGacacccucgccacuaCCACGUa -3'
miRNA:   3'- -GGC-CUGCCGGUccCGGU--UGC---------------GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 22943 0.73 0.36195
Target:  5'- aUCGGcUGGCCGacGGGCCGGCGCCGu-- -3'
miRNA:   3'- -GGCCuGCCGGU--CCCGGUUGCGGUgcg -5'
11003 5' -61.7 NC_002794.1 + 23949 0.68 0.652789
Target:  5'- gCCGcGGCGcacuuggcuccgaGCCAGcggcgaGGCCGGCGCCAcCGUc -3'
miRNA:   3'- -GGC-CUGC-------------CGGUC------CCGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 24064 0.66 0.765274
Target:  5'- cCCGGACcacacccguGcGCCcGGGCgGGCGUCGcCGUa -3'
miRNA:   3'- -GGCCUG---------C-CGGuCCCGgUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 26647 0.72 0.39028
Target:  5'- cCCGGACGGCggccggcucgucggCGGGGUgGAgCGCCAC-Cg -3'
miRNA:   3'- -GGCCUGCCG--------------GUCCCGgUU-GCGGUGcG- -5'
11003 5' -61.7 NC_002794.1 + 28668 0.71 0.441723
Target:  5'- cCCGGAaccgccGCCGGuGGCCGuCGCCGcCGCc -3'
miRNA:   3'- -GGCCUgc----CGGUC-CCGGUuGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 29210 0.71 0.467532
Target:  5'- uCCGG-CGGUCGGcGGCCGucggcCGCCGaGCa -3'
miRNA:   3'- -GGCCuGCCGGUC-CCGGUu----GCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 30986 0.68 0.663293
Target:  5'- cCCGGcgACGG-CGGGGUCuuCGCCggACGUc -3'
miRNA:   3'- -GGCC--UGCCgGUCCCGGuuGCGG--UGCG- -5'
11003 5' -61.7 NC_002794.1 + 31052 0.69 0.59637
Target:  5'- -gGGcaGCGGCaCGGcGGCCAGC-UCGCGCa -3'
miRNA:   3'- ggCC--UGCCG-GUC-CCGGUUGcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 31391 0.67 0.701195
Target:  5'- gUCGG-CGGCCcc-GCCGcgccCGCCGCGCc -3'
miRNA:   3'- -GGCCuGCCGGuccCGGUu---GCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.