miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 32270 0.68 0.615468
Target:  5'- aCGGcCGGCCGaucGGCgagCGACGCCGcCGCc -3'
miRNA:   3'- gGCCuGCCGGUc--CCG---GUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 32590 0.76 0.250758
Target:  5'- gCCGGGgccggGGCCGGGGCCGGgGCCGgGg -3'
miRNA:   3'- -GGCCUg----CCGGUCCCGGUUgCGGUgCg -5'
11003 5' -61.7 NC_002794.1 + 33454 0.75 0.286435
Target:  5'- cUCGGGCGGCCGccGGacgcGCCcACGCCGCuGCa -3'
miRNA:   3'- -GGCCUGCCGGU--CC----CGGuUGCGGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 33510 0.67 0.701195
Target:  5'- gCUGGACccgGGCCAGaGCCucuccgGCCugGCc -3'
miRNA:   3'- -GGCCUG---CCGGUCcCGGuug---CGGugCG- -5'
11003 5' -61.7 NC_002794.1 + 34039 0.69 0.605911
Target:  5'- gCCGccuGCuGCC-GGGCCGGC-CCGCGCa -3'
miRNA:   3'- -GGCc--UGcCGGuCCCGGUUGcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 34100 0.7 0.494096
Target:  5'- gUCGGGCGGCCcGGaCCGcgACGUC-CGCg -3'
miRNA:   3'- -GGCCUGCCGGuCCcGGU--UGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 34266 0.71 0.476307
Target:  5'- gCGGAcCGcGCgCAGgcGGCCAGCGCCA-GCg -3'
miRNA:   3'- gGCCU-GC-CG-GUC--CCGGUUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 34733 0.67 0.701195
Target:  5'- gCGGGCGGCCgcAGaGcGCgCGACGgCGCGg -3'
miRNA:   3'- gGCCUGCCGG--UC-C-CG-GUUGCgGUGCg -5'
11003 5' -61.7 NC_002794.1 + 34791 0.71 0.467532
Target:  5'- gCCGaGuCGGCCGaaccGGCCcGgGCCGCGCg -3'
miRNA:   3'- -GGC-CuGCCGGUc---CCGGuUgCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 34842 0.69 0.558494
Target:  5'- gCCGGAgCGGgCGucGGaGCgGGCGCCGCGg -3'
miRNA:   3'- -GGCCU-GCCgGU--CC-CGgUUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 35814 0.74 0.319127
Target:  5'- cCCGGAccCGGUUuccGGGCCGcCGCCACGa -3'
miRNA:   3'- -GGCCU--GCCGGu--CCCGGUuGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 36351 0.73 0.377085
Target:  5'- cCCGGcgugcGCGGCCAccGGGUgcGCGCC-CGCg -3'
miRNA:   3'- -GGCC-----UGCCGGU--CCCGguUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 36765 0.68 0.653745
Target:  5'- gCGGACGGCCAcccagcuguaGCCGGcCGCCguguACGCc -3'
miRNA:   3'- gGCCUGCCGGUcc--------CGGUU-GCGG----UGCG- -5'
11003 5' -61.7 NC_002794.1 + 37534 0.66 0.768807
Target:  5'- cCCGGcUGGCgaacagccgccggaGGGGCC-ACGaCCGCGUc -3'
miRNA:   3'- -GGCCuGCCGg-------------UCCCGGuUGC-GGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 37880 0.79 0.169296
Target:  5'- cUCGGGCGGCgGGGGCgGugGCgGCGg -3'
miRNA:   3'- -GGCCUGCCGgUCCCGgUugCGgUGCg -5'
11003 5' -61.7 NC_002794.1 + 37984 0.67 0.71987
Target:  5'- gCCGaucGCGGUCAgccGGGCC-ACGCCguaggccugcaGCGCu -3'
miRNA:   3'- -GGCc--UGCCGGU---CCCGGuUGCGG-----------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 38445 0.67 0.682316
Target:  5'- gCCGGACugaggaGCCGGcgcGGCCG-CGgCGCGCc -3'
miRNA:   3'- -GGCCUGc-----CGGUC---CCGGUuGCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 38601 0.67 0.718942
Target:  5'- cCCGGACgagaGGCCggacGGGcgcgucccgacucGCCggUGCgGCGCg -3'
miRNA:   3'- -GGCCUG----CCGG----UCC-------------CGGuuGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 38683 0.7 0.494096
Target:  5'- cCC--GCGGaCGGGGUCAcCGCCGCGCc -3'
miRNA:   3'- -GGccUGCCgGUCCCGGUuGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 40339 0.66 0.74737
Target:  5'- gCGGACGcGCCAccGgCGGCGCCGCc- -3'
miRNA:   3'- gGCCUGC-CGGUccCgGUUGCGGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.