miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 195578 0.67 0.710562
Target:  5'- cCCGaccGACcGCCGGaccGGCCGACGCgccccCGCGCu -3'
miRNA:   3'- -GGC---CUGcCGGUC---CCGGUUGCG-----GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 194963 0.72 0.424973
Target:  5'- gCGGcACGaacGCCGGcucguacaGGCaCAGCGCCGCGCg -3'
miRNA:   3'- gGCC-UGC---CGGUC--------CCG-GUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 194328 0.67 0.71987
Target:  5'- gCGGAuCGcGCCAcGGGCUcuccgacgggGGCGCCAggaacCGCu -3'
miRNA:   3'- gGCCU-GC-CGGU-CCCGG----------UUGCGGU-----GCG- -5'
11003 5' -61.7 NC_002794.1 + 194003 0.7 0.539803
Target:  5'- cCCGGcuucgccuucGCGGCCGccgccGCCGGCGCCuCGCc -3'
miRNA:   3'- -GGCC----------UGCCGGUcc---CGGUUGCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 192632 0.76 0.256439
Target:  5'- gUCGGGCGGCCGcuccaGCCGcgcCGCCGCGCg -3'
miRNA:   3'- -GGCCUGCCGGUcc---CGGUu--GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 192422 0.73 0.36195
Target:  5'- gCCGcGACGGguCCGcGGCCGgcGCGUCGCGCg -3'
miRNA:   3'- -GGC-CUGCC--GGUcCCGGU--UGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 191992 0.7 0.530536
Target:  5'- uCC-GACGGCCGGgacgguagcGGCgGugGCCGCGg -3'
miRNA:   3'- -GGcCUGCCGGUC---------CCGgUugCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 191490 0.72 0.391852
Target:  5'- aCGGGCGaucguccGCCaccgagAGGuGCCAGCGCCGgGCg -3'
miRNA:   3'- gGCCUGC-------CGG------UCC-CGGUUGCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 190069 0.68 0.615468
Target:  5'- gCGGugGaacaCCAGGGCguucuCGUCGCGCa -3'
miRNA:   3'- gGCCugCc---GGUCCCGguu--GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 189953 0.7 0.530536
Target:  5'- cCCGGACGGaCCGacggacGGGCCGccCGCU-CGCc -3'
miRNA:   3'- -GGCCUGCC-GGU------CCCGGUu-GCGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 189884 0.67 0.671868
Target:  5'- aCCGGcCcGCUcGGGCCcgccgucAGCGCCGcCGCg -3'
miRNA:   3'- -GGCCuGcCGGuCCCGG-------UUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 189575 0.78 0.190434
Target:  5'- gUCGGcCGGCCcGGGCCGGCGCCccuuaGCc -3'
miRNA:   3'- -GGCCuGCCGGuCCCGGUUGCGGug---CG- -5'
11003 5' -61.7 NC_002794.1 + 189396 0.67 0.682316
Target:  5'- cUCGGccACGuaguccGCCAGGGCCAGCggguucugcuGCCGCa- -3'
miRNA:   3'- -GGCC--UGC------CGGUCCCGGUUG----------CGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 189117 0.66 0.74737
Target:  5'- aCGGGCcaGGUgguccaagugCGGGGCCGccaGCGCCAgacucuccCGCg -3'
miRNA:   3'- gGCCUG--CCG----------GUCCCGGU---UGCGGU--------GCG- -5'
11003 5' -61.7 NC_002794.1 + 189015 0.68 0.63461
Target:  5'- gUCGcGACaGGCCAGGagccgcucgaccGCCAGCggcggGCUGCGCg -3'
miRNA:   3'- -GGC-CUG-CCGGUCC------------CGGUUG-----CGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 188949 0.66 0.75637
Target:  5'- uCCGGGCGuGCgCAGGuuCAGguCCACGCc -3'
miRNA:   3'- -GGCCUGC-CG-GUCCcgGUUgcGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 188884 0.67 0.709627
Target:  5'- -aGGaACGGCCAgcaguggcGGGCCAGCucggucaGCC-CGUa -3'
miRNA:   3'- ggCC-UGCCGGU--------CCCGGUUG-------CGGuGCG- -5'
11003 5' -61.7 NC_002794.1 + 188787 0.69 0.577364
Target:  5'- gCGGuaGCGGCCGGccccGCCgAGCGCCguccagGCGCa -3'
miRNA:   3'- gGCC--UGCCGGUCc---CGG-UUGCGG------UGCG- -5'
11003 5' -61.7 NC_002794.1 + 188367 0.7 0.548189
Target:  5'- gCCGGcgGCGGCCGagggcguucucccGGGCUucuCGCCGCa- -3'
miRNA:   3'- -GGCC--UGCCGGU-------------CCCGGuu-GCGGUGcg -5'
11003 5' -61.7 NC_002794.1 + 188249 0.75 0.270504
Target:  5'- aCCGGcgGCGGCgGcgguagcggcGGGCCGgguagcggaugcaggGCGCCGCGCg -3'
miRNA:   3'- -GGCC--UGCCGgU----------CCCGGU---------------UGCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.