miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11003 5' -61.7 NC_002794.1 + 188043 0.7 0.530536
Target:  5'- cCCGGacGCGGCgAGucucgacuucGGCCAGCGUCAcCGUc -3'
miRNA:   3'- -GGCC--UGCCGgUC----------CCGGUUGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 187840 0.69 0.586853
Target:  5'- cUCGG-CGcGCCgAGGGCUcugcccaGCCGCGCg -3'
miRNA:   3'- -GGCCuGC-CGG-UCCCGGuug----CGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 187505 0.69 0.605911
Target:  5'- nCaGGCGGCCAGGGC--GC-CCGCGg -3'
miRNA:   3'- gGcCUGCCGGUCCCGguUGcGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 187473 0.71 0.467532
Target:  5'- cUCGGcGCGcGCC-GGGCCGaggacgAgGCCGCGCa -3'
miRNA:   3'- -GGCC-UGC-CGGuCCCGGU------UgCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 187054 0.7 0.503104
Target:  5'- cCCGGagcccGCGGCCcgccAGGuGCCGcaggcugcuCGCCACGUg -3'
miRNA:   3'- -GGCC-----UGCCGG----UCC-CGGUu--------GCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 186764 0.66 0.738282
Target:  5'- -gGGGCaGGCCAGGcGCUccgacACGUagCGCGCg -3'
miRNA:   3'- ggCCUG-CCGGUCC-CGGu----UGCG--GUGCG- -5'
11003 5' -61.7 NC_002794.1 + 186287 0.76 0.234336
Target:  5'- gCGGcaccGCGGCCAGgcGGCCGGuCGCCGCGg -3'
miRNA:   3'- gGCC----UGCCGGUC--CCGGUU-GCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 186043 0.68 0.660431
Target:  5'- cCCGGcUGGCCGucguuccccgguccGuGGCCAcCGCCGcCGCc -3'
miRNA:   3'- -GGCCuGCCGGU--------------C-CCGGUuGCGGU-GCG- -5'
11003 5' -61.7 NC_002794.1 + 185914 0.66 0.74737
Target:  5'- aCCGGGCcccucGCCAccgccGGCCAccCGCCAgGCu -3'
miRNA:   3'- -GGCCUGc----CGGUc----CCGGUu-GCGGUgCG- -5'
11003 5' -61.7 NC_002794.1 + 185345 0.68 0.625037
Target:  5'- aCCGcucGCGcGCCGccgcgagcGGGCCgAACGCCGCGa -3'
miRNA:   3'- -GGCc--UGC-CGGU--------CCCGG-UUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 185196 0.69 0.605911
Target:  5'- gUCGGcGCGGUCAucGcGGCUcGCGCCGCGg -3'
miRNA:   3'- -GGCC-UGCCGGU--C-CCGGuUGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 184610 0.71 0.441723
Target:  5'- aUCGGcaACGGCCAGcGG-CAGCGuCCACGa -3'
miRNA:   3'- -GGCC--UGCCGGUC-CCgGUUGC-GGUGCg -5'
11003 5' -61.7 NC_002794.1 + 184577 0.69 0.577364
Target:  5'- gCCGcGGCGGCgGcGGCCAcgcGCGgCCGCGg -3'
miRNA:   3'- -GGC-CUGCCGgUcCCGGU---UGC-GGUGCg -5'
11003 5' -61.7 NC_002794.1 + 184503 0.8 0.136491
Target:  5'- cCCGGGCGGCgC-GGGCCccgcGCGCgGCGCg -3'
miRNA:   3'- -GGCCUGCCG-GuCCCGGu---UGCGgUGCG- -5'
11003 5' -61.7 NC_002794.1 + 184324 0.66 0.755474
Target:  5'- uCCGcucACGGCCGGGGaCAGCGacaggguCCGCaGCu -3'
miRNA:   3'- -GGCc--UGCCGGUCCCgGUUGC-------GGUG-CG- -5'
11003 5' -61.7 NC_002794.1 + 184101 0.67 0.710562
Target:  5'- aCGGcgaACGcGCCAGcGccccgcucGCCGGCGUCACGUa -3'
miRNA:   3'- gGCC---UGC-CGGUC-C--------CGGUUGCGGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 184047 0.7 0.548189
Target:  5'- gCGcGCGGUCGcGGGCCGcggcgaaGCGgCACGCg -3'
miRNA:   3'- gGCcUGCCGGU-CCCGGU-------UGCgGUGCG- -5'
11003 5' -61.7 NC_002794.1 + 183923 0.7 0.503104
Target:  5'- aCGGucccCGG-CAGGGUCAcCGCCACGa -3'
miRNA:   3'- gGCCu---GCCgGUCCCGGUuGCGGUGCg -5'
11003 5' -61.7 NC_002794.1 + 183857 0.71 0.441723
Target:  5'- uCCGucGCGGCCgucGGGGCCAcCGCCGacacCGCc -3'
miRNA:   3'- -GGCc-UGCCGG---UCCCGGUuGCGGU----GCG- -5'
11003 5' -61.7 NC_002794.1 + 183667 0.72 0.424973
Target:  5'- gCCGGGCccgagcGCCGacGGGUCGAgcgccCGCCGCGCg -3'
miRNA:   3'- -GGCCUGc-----CGGU--CCCGGUU-----GCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.