miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11004 3' -59.1 NC_002794.1 + 63367 0.66 0.884498
Target:  5'- cCCGUCGcccgCGCCGCUGccccgccgccccgcUGCUCccCGUUu -3'
miRNA:   3'- -GGCAGCa---GCGGCGGC--------------ACGAGcaGCAG- -5'
11004 3' -59.1 NC_002794.1 + 153660 0.66 0.879865
Target:  5'- gCCG-CGUCcgGCCGCCGguugugagGCUCGaCG-Cg -3'
miRNA:   3'- -GGCaGCAG--CGGCGGCa-------CGAGCaGCaG- -5'
11004 3' -59.1 NC_002794.1 + 47413 0.66 0.879865
Target:  5'- gCCGUCGgCGCCGUCGcGCggagCGccaggCGUUu -3'
miRNA:   3'- -GGCAGCaGCGGCGGCaCGa---GCa----GCAG- -5'
11004 3' -59.1 NC_002794.1 + 32652 0.66 0.879865
Target:  5'- aCCGgggCGaCGgCGCCGUcCcCGUCGUCc -3'
miRNA:   3'- -GGCa--GCaGCgGCGGCAcGaGCAGCAG- -5'
11004 3' -59.1 NC_002794.1 + 12224 0.66 0.879865
Target:  5'- gCGUCGgCGgCGCCG-GCggCGcCGUCc -3'
miRNA:   3'- gGCAGCaGCgGCGGCaCGa-GCaGCAG- -5'
11004 3' -59.1 NC_002794.1 + 146344 0.66 0.879195
Target:  5'- cCCGUCGUcgaucgcggcggcCGCCcggguaGCCGUccGCUCGUCc-- -3'
miRNA:   3'- -GGCAGCA-------------GCGG------CGGCA--CGAGCAGcag -5'
11004 3' -59.1 NC_002794.1 + 90287 0.66 0.873079
Target:  5'- gCgGUCGagcUCGCCGacguuCCGUugGCUCGUCG-Cg -3'
miRNA:   3'- -GgCAGC---AGCGGC-----GGCA--CGAGCAGCaG- -5'
11004 3' -59.1 NC_002794.1 + 128541 0.66 0.873079
Target:  5'- aCgGUCGggugCGCCGUCcUGCUgGUCaUCg -3'
miRNA:   3'- -GgCAGCa---GCGGCGGcACGAgCAGcAG- -5'
11004 3' -59.1 NC_002794.1 + 121986 0.66 0.873079
Target:  5'- cCCGcCGagCGCgGCCGggaGCUguuccaCGUCGUCu -3'
miRNA:   3'- -GGCaGCa-GCGgCGGCa--CGA------GCAGCAG- -5'
11004 3' -59.1 NC_002794.1 + 88966 0.66 0.873079
Target:  5'- aCGagCGUgGCCGCCGga-UCGUCG-Cg -3'
miRNA:   3'- gGCa-GCAgCGGCGGCacgAGCAGCaG- -5'
11004 3' -59.1 NC_002794.1 + 68904 0.66 0.8661
Target:  5'- aCCGaUCG-CGUCGCgGgGCUCGcggCGUCc -3'
miRNA:   3'- -GGC-AGCaGCGGCGgCaCGAGCa--GCAG- -5'
11004 3' -59.1 NC_002794.1 + 66139 0.66 0.8661
Target:  5'- aCGcUCGUCGUCGUCcaaacGCUCG-CGUCc -3'
miRNA:   3'- gGC-AGCAGCGGCGGca---CGAGCaGCAG- -5'
11004 3' -59.1 NC_002794.1 + 138106 0.66 0.8661
Target:  5'- aCCGUCugcagGagGgCGUgGUGCUCGUCGcCg -3'
miRNA:   3'- -GGCAG-----CagCgGCGgCACGAGCAGCaG- -5'
11004 3' -59.1 NC_002794.1 + 120709 0.66 0.8661
Target:  5'- -aGagG-CGCCGCCGUcGUUCuUCGUCg -3'
miRNA:   3'- ggCagCaGCGGCGGCA-CGAGcAGCAG- -5'
11004 3' -59.1 NC_002794.1 + 122309 0.66 0.8661
Target:  5'- cCCGcUgGcCGUCGCCGUGCgCGUggCGUUg -3'
miRNA:   3'- -GGC-AgCaGCGGCGGCACGaGCA--GCAG- -5'
11004 3' -59.1 NC_002794.1 + 53237 0.66 0.8661
Target:  5'- uCCGUCcUCGgcCCGCCGcGCcggCGUCGcCg -3'
miRNA:   3'- -GGCAGcAGC--GGCGGCaCGa--GCAGCaG- -5'
11004 3' -59.1 NC_002794.1 + 48596 0.66 0.8661
Target:  5'- gCGgcgCGUCGCCGUCGg---CGUCGg- -3'
miRNA:   3'- gGCa--GCAGCGGCGGCacgaGCAGCag -5'
11004 3' -59.1 NC_002794.1 + 107352 0.66 0.865392
Target:  5'- uCCgGUCGcCGCgagcgaucuccucCGUCGUGCUCGcggcCGUCg -3'
miRNA:   3'- -GG-CAGCaGCG-------------GCGGCACGAGCa---GCAG- -5'
11004 3' -59.1 NC_002794.1 + 71846 0.66 0.858934
Target:  5'- cCCGUCGaCGggaccucaCCGCCGgccagacuccGCUCGaCGUCg -3'
miRNA:   3'- -GGCAGCaGC--------GGCGGCa---------CGAGCaGCAG- -5'
11004 3' -59.1 NC_002794.1 + 93732 0.66 0.858934
Target:  5'- gCCGcUCG-CGCCGCgagacCGUGCUCuUCGa- -3'
miRNA:   3'- -GGC-AGCaGCGGCG-----GCACGAGcAGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.