miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11004 5' -58.3 NC_002794.1 + 79979 0.66 0.883141
Target:  5'- cGGcUCGgCGAcGAgGA-GGCGGAGGAg -3'
miRNA:   3'- aCC-AGCgGCUuCUgCUgCCGCCUCUU- -5'
11004 5' -58.3 NC_002794.1 + 94026 0.66 0.883141
Target:  5'- gGGUucCGCCGGcgggcccgAGAgCGGCGGCGGugcGGGGg -3'
miRNA:   3'- aCCA--GCGGCU--------UCU-GCUGCCGCC---UCUU- -5'
11004 5' -58.3 NC_002794.1 + 21623 0.66 0.883141
Target:  5'- -cGUCGCCGGgaGGACGACGa-GGaAGAAg -3'
miRNA:   3'- acCAGCGGCU--UCUGCUGCcgCC-UCUU- -5'
11004 5' -58.3 NC_002794.1 + 126380 0.66 0.883141
Target:  5'- gUGGgCGCCGggGccugcGCGGCGGCGu---- -3'
miRNA:   3'- -ACCaGCGGCuuC-----UGCUGCCGCcucuu -5'
11004 5' -58.3 NC_002794.1 + 94901 0.66 0.876272
Target:  5'- cGGUCGaCGu-GGCGACccugaacgaGGUGGAGAGg -3'
miRNA:   3'- aCCAGCgGCuuCUGCUG---------CCGCCUCUU- -5'
11004 5' -58.3 NC_002794.1 + 153063 0.66 0.876272
Target:  5'- cGGUCcCCGA--GCGACGGuCGGAa-- -3'
miRNA:   3'- aCCAGcGGCUucUGCUGCC-GCCUcuu -5'
11004 5' -58.3 NC_002794.1 + 191916 0.66 0.876272
Target:  5'- cGGcugaaUCGgCGAAGACGAgaggauCGGCGGcGAGu -3'
miRNA:   3'- aCC-----AGCgGCUUCUGCU------GCCGCCuCUU- -5'
11004 5' -58.3 NC_002794.1 + 64794 0.66 0.87417
Target:  5'- cGGUuccgcggcgagcgaCGCCGcGGACGGCGGCGa---- -3'
miRNA:   3'- aCCA--------------GCGGCuUCUGCUGCCGCcucuu -5'
11004 5' -58.3 NC_002794.1 + 102634 0.66 0.869197
Target:  5'- cGGUcaucCGCCGGcuGGCGGCGcGCucGGAGGAg -3'
miRNA:   3'- aCCA----GCGGCUu-CUGCUGC-CG--CCUCUU- -5'
11004 5' -58.3 NC_002794.1 + 146985 0.66 0.869197
Target:  5'- aGGUCggcgccgccgGCCGAcgucGGCGGCGGCGGc--- -3'
miRNA:   3'- aCCAG----------CGGCUu---CUGCUGCCGCCucuu -5'
11004 5' -58.3 NC_002794.1 + 109166 0.66 0.869197
Target:  5'- aUGG-CGaCGAGcGGCGguaGCGGCGGAGGc -3'
miRNA:   3'- -ACCaGCgGCUU-CUGC---UGCCGCCUCUu -5'
11004 5' -58.3 NC_002794.1 + 146316 0.66 0.869197
Target:  5'- gGGcUCGCCGAc-GCG-CGGCGGAu-- -3'
miRNA:   3'- aCC-AGCGGCUucUGCuGCCGCCUcuu -5'
11004 5' -58.3 NC_002794.1 + 157195 0.66 0.869197
Target:  5'- cGGUCGCCGAuggAGACagguccgcACGGacaccaccaaguCGGAGGAa -3'
miRNA:   3'- aCCAGCGGCU---UCUGc-------UGCC------------GCCUCUU- -5'
11004 5' -58.3 NC_002794.1 + 63483 0.66 0.869197
Target:  5'- cGGcCGCCGucGACGACGccGCGGc--- -3'
miRNA:   3'- aCCaGCGGCuuCUGCUGC--CGCCucuu -5'
11004 5' -58.3 NC_002794.1 + 110621 0.66 0.869197
Target:  5'- cGGgaGCCGcGGcgccGCGGCGGCGGGGu- -3'
miRNA:   3'- aCCagCGGCuUC----UGCUGCCGCCUCuu -5'
11004 5' -58.3 NC_002794.1 + 126702 0.66 0.867035
Target:  5'- aGGggCGCCGcGGACucggggcgagggggGugGGUGGGGAc -3'
miRNA:   3'- aCCa-GCGGCuUCUG--------------CugCCGCCUCUu -5'
11004 5' -58.3 NC_002794.1 + 125433 0.66 0.861922
Target:  5'- -cGUCGCgaauCGGaacaaGGGCGACGGCGGcGAGc -3'
miRNA:   3'- acCAGCG----GCU-----UCUGCUGCCGCCuCUU- -5'
11004 5' -58.3 NC_002794.1 + 61536 0.66 0.861922
Target:  5'- cGGcCGCCgcGAAGACGacgccgccGCGGCGGcGGc -3'
miRNA:   3'- aCCaGCGG--CUUCUGC--------UGCCGCCuCUu -5'
11004 5' -58.3 NC_002794.1 + 14056 0.66 0.861922
Target:  5'- ---aCGCCGAcGGCGAUccuGGCGGAGc- -3'
miRNA:   3'- accaGCGGCUuCUGCUG---CCGCCUCuu -5'
11004 5' -58.3 NC_002794.1 + 141435 0.66 0.861922
Target:  5'- cGGgggCGCCGggGGCGccgggagcggcGCGGCGuccGGAc -3'
miRNA:   3'- aCCa--GCGGCuuCUGC-----------UGCCGCc--UCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.