miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 101597 0.66 0.937658
Target:  5'- gGGGGGCgGguGCCGGCCcgccGGGCGggGGu -3'
miRNA:   3'- -CUCCUG-CguCGGCUGGu---UCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 100203 0.66 0.937188
Target:  5'- -uGGGC-CAGUgucugcuCGACgAGGGCGUCGAg -3'
miRNA:   3'- cuCCUGcGUCG-------GCUGgUUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 11337 0.66 0.93285
Target:  5'- cGA-GACGCAGgCGAUCuccGGCGUCGc -3'
miRNA:   3'- -CUcCUGCGUCgGCUGGuu-CUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 32641 0.66 0.93285
Target:  5'- gGGGGGCGa---CGACCGGGGCGaCGGc -3'
miRNA:   3'- -CUCCUGCgucgGCUGGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 63475 0.66 0.93285
Target:  5'- cGAGG-CgGCGGCCGccgucgacgacGCCGcGGCGUCGu -3'
miRNA:   3'- -CUCCuG-CGUCGGC-----------UGGUuCUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 95763 0.66 0.93285
Target:  5'- cGGGGCgGCGGCCGcgacggcgGCCGGGGCGa--- -3'
miRNA:   3'- cUCCUG-CGUCGGC--------UGGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 70069 0.66 0.93285
Target:  5'- -cGGcCGCAGCCGcAgCAAGGCGaCGc -3'
miRNA:   3'- cuCCuGCGUCGGC-UgGUUCUGCaGCu -5'
11008 3' -56.6 NC_002794.1 + 102191 0.66 0.93285
Target:  5'- cGAGGACcugGCGGCCG-CCGuGACGg--- -3'
miRNA:   3'- -CUCCUG---CGUCGGCuGGUuCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 188045 0.66 0.93285
Target:  5'- -cGGACGCGGCgagucucgacuuCGGCCA--GCGUCa- -3'
miRNA:   3'- cuCCUGCGUCG------------GCUGGUucUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 120057 0.66 0.93285
Target:  5'- -cGGugGCGGCCGcggagGCCGAcGCGgCGGu -3'
miRNA:   3'- cuCCugCGUCGGC-----UGGUUcUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 9058 0.66 0.93285
Target:  5'- cGAGGcggugGCGCAGgCGAuCCGAGAC-UUGGa -3'
miRNA:   3'- -CUCC-----UGCGUCgGCU-GGUUCUGcAGCU- -5'
11008 3' -56.6 NC_002794.1 + 123066 0.66 0.931861
Target:  5'- uGGGGACGaugcagaacguGCCGACCcuGGGcccgcACGUCGAc -3'
miRNA:   3'- -CUCCUGCgu---------CGGCUGG--UUC-----UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 116412 0.66 0.927814
Target:  5'- cGGGGCGCgAGC--ACCAGGGCG-CGGg -3'
miRNA:   3'- cUCCUGCG-UCGgcUGGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 125732 0.66 0.927814
Target:  5'- gGAGGAgGCggaGGCgGGCCGcgGGACGgCGGc -3'
miRNA:   3'- -CUCCUgCG---UCGgCUGGU--UCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 31050 0.66 0.927814
Target:  5'- uAGGGCaGCGGCacggCGGCCAgcucgcgcAGcACGUCGAg -3'
miRNA:   3'- cUCCUG-CGUCG----GCUGGU--------UC-UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 12020 0.66 0.927814
Target:  5'- ---uGCGCcGCCGGCCcGGGCGUCc- -3'
miRNA:   3'- cuccUGCGuCGGCUGGuUCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 119990 0.66 0.92255
Target:  5'- -cGGAgcCGCAGCucuuCGACC-AGGCGaUCGAa -3'
miRNA:   3'- cuCCU--GCGUCG----GCUGGuUCUGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 55382 0.66 0.92255
Target:  5'- cGAGGcggccgAgGCGGCCGaggcgGCCGAGGCGgcCGAg -3'
miRNA:   3'- -CUCC------UgCGUCGGC-----UGGUUCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 101025 0.66 0.92255
Target:  5'- gGGGGACGCgGGCCGGgCGcGG-GUCGGc -3'
miRNA:   3'- -CUCCUGCG-UCGGCUgGUuCUgCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 126158 0.66 0.92255
Target:  5'- uGGGACGCGGUCuACgCGcAGAgGUCGGu -3'
miRNA:   3'- cUCCUGCGUCGGcUG-GU-UCUgCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.