Results 1 - 20 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 146877 | 0.78 | 0.34725 |
Target: 5'- gGGGGGCGCGGUCGGCCGaugauuauaaaAGGCGcUCGGg -3' miRNA: 3'- -CUCCUGCGUCGGCUGGU-----------UCUGC-AGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 180378 | 0.77 | 0.392211 |
Target: 5'- cGAGGACGCuGCCGGCCAgcugcucgaacgggAccGACGUCGc -3' miRNA: 3'- -CUCCUGCGuCGGCUGGU--------------U--CUGCAGCu -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 122513 | 0.77 | 0.370447 |
Target: 5'- gGAGGGCuucucCGGCCggaucgacGACCAGGACGUCGAg -3' miRNA: 3'- -CUCCUGc----GUCGG--------CUGGUUCUGCAGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 121493 | 0.76 | 0.411396 |
Target: 5'- -cGGACGCGGCCuccGCCGGGGCGaCGAc -3' miRNA: 3'- cuCCUGCGUCGGc--UGGUUCUGCaGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 10950 | 0.76 | 0.446104 |
Target: 5'- cAGGAacccggaGgGGCCGGCCGAGACGUcCGAu -3' miRNA: 3'- cUCCUg------CgUCGGCUGGUUCUGCA-GCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 187496 | 0.76 | 0.411396 |
Target: 5'- cGAGGccGCGCAGgCGGCCAGGGCGcccgCGGa -3' miRNA: 3'- -CUCC--UGCGUCgGCUGGUUCUGCa---GCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 185266 | 0.76 | 0.419916 |
Target: 5'- -cGGACGCcGCCGGCCGAGugGgccgcCGGa -3' miRNA: 3'- cuCCUGCGuCGGCUGGUUCugCa----GCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 185402 | 0.75 | 0.46406 |
Target: 5'- cGAGGGCGCGGgcCCGACCGc--CGUCGAc -3' miRNA: 3'- -CUCCUGCGUC--GGCUGGUucuGCAGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 119119 | 0.74 | 0.520035 |
Target: 5'- cGGGGACGCAGaaGGCCuggcAGGCGuUCGGg -3' miRNA: 3'- -CUCCUGCGUCggCUGGu---UCUGC-AGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 146983 | 0.74 | 0.520035 |
Target: 5'- cGAGGucgGCGCcGCCGGCC--GACGUCGGc -3' miRNA: 3'- -CUCC---UGCGuCGGCUGGuuCUGCAGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 22608 | 0.74 | 0.520035 |
Target: 5'- cGGGACGCucgAGCCGAUCGGGcCGcUCGAg -3' miRNA: 3'- cUCCUGCG---UCGGCUGGUUCuGC-AGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 144766 | 0.73 | 0.568603 |
Target: 5'- uGGGaACGCAGCUGGCC--GGCGUCGc -3' miRNA: 3'- cUCC-UGCGUCGGCUGGuuCUGCAGCu -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 119767 | 0.72 | 0.658136 |
Target: 5'- cAGGuCGCGGCCGGCCuccAGGCGgcucCGGu -3' miRNA: 3'- cUCCuGCGUCGGCUGGu--UCUGCa---GCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 152978 | 0.72 | 0.638189 |
Target: 5'- cGGGGCGCuucGCCGAC--AGGCGUCGu -3' miRNA: 3'- cUCCUGCGu--CGGCUGguUCUGCAGCu -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 139181 | 0.72 | 0.628205 |
Target: 5'- gGAGGGCGUAGCUgucgaaGGCCAuGACGgCGAc -3' miRNA: 3'- -CUCCUGCGUCGG------CUGGUuCUGCaGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 146606 | 0.72 | 0.618224 |
Target: 5'- cGAGcGACGaAGgCGGCgAGGACGUCGAa -3' miRNA: 3'- -CUC-CUGCgUCgGCUGgUUCUGCAGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 123810 | 0.72 | 0.618224 |
Target: 5'- cGGGGGCGCGGaCGAgCAGGAgcggcgccCGUCGAu -3' miRNA: 3'- -CUCCUGCGUCgGCUgGUUCU--------GCAGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 118241 | 0.71 | 0.687888 |
Target: 5'- gGAGGAUGUcggcgggcuggaGGUCGGCCGGGGCGgCGGc -3' miRNA: 3'- -CUCCUGCG------------UCGGCUGGUUCUGCaGCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 149960 | 0.71 | 0.697728 |
Target: 5'- cGGGACGUGGCCGACCugccgcGGACcggCGGc -3' miRNA: 3'- cUCCUGCGUCGGCUGGu-----UCUGca-GCU- -5' |
|||||||
11008 | 3' | -56.6 | NC_002794.1 | + | 153803 | 0.71 | 0.697728 |
Target: 5'- uGAGGACGagAGCCGGCCcGGACcucuuUCGGg -3' miRNA: 3'- -CUCCUGCg-UCGGCUGGuUCUGc----AGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home