miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 146877 0.78 0.34725
Target:  5'- gGGGGGCGCGGUCGGCCGaugauuauaaaAGGCGcUCGGg -3'
miRNA:   3'- -CUCCUGCGUCGGCUGGU-----------UCUGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 122513 0.77 0.370447
Target:  5'- gGAGGGCuucucCGGCCggaucgacGACCAGGACGUCGAg -3'
miRNA:   3'- -CUCCUGc----GUCGG--------CUGGUUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 180378 0.77 0.392211
Target:  5'- cGAGGACGCuGCCGGCCAgcugcucgaacgggAccGACGUCGc -3'
miRNA:   3'- -CUCCUGCGuCGGCUGGU--------------U--CUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 121493 0.76 0.411396
Target:  5'- -cGGACGCGGCCuccGCCGGGGCGaCGAc -3'
miRNA:   3'- cuCCUGCGUCGGc--UGGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 187496 0.76 0.411396
Target:  5'- cGAGGccGCGCAGgCGGCCAGGGCGcccgCGGa -3'
miRNA:   3'- -CUCC--UGCGUCgGCUGGUUCUGCa---GCU- -5'
11008 3' -56.6 NC_002794.1 + 185266 0.76 0.419916
Target:  5'- -cGGACGCcGCCGGCCGAGugGgccgcCGGa -3'
miRNA:   3'- cuCCUGCGuCGGCUGGUUCugCa----GCU- -5'
11008 3' -56.6 NC_002794.1 + 10950 0.76 0.446104
Target:  5'- cAGGAacccggaGgGGCCGGCCGAGACGUcCGAu -3'
miRNA:   3'- cUCCUg------CgUCGGCUGGUUCUGCA-GCU- -5'
11008 3' -56.6 NC_002794.1 + 185402 0.75 0.46406
Target:  5'- cGAGGGCGCGGgcCCGACCGc--CGUCGAc -3'
miRNA:   3'- -CUCCUGCGUC--GGCUGGUucuGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 146983 0.74 0.520035
Target:  5'- cGAGGucgGCGCcGCCGGCC--GACGUCGGc -3'
miRNA:   3'- -CUCC---UGCGuCGGCUGGuuCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 22608 0.74 0.520035
Target:  5'- cGGGACGCucgAGCCGAUCGGGcCGcUCGAg -3'
miRNA:   3'- cUCCUGCG---UCGGCUGGUUCuGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 119119 0.74 0.520035
Target:  5'- cGGGGACGCAGaaGGCCuggcAGGCGuUCGGg -3'
miRNA:   3'- -CUCCUGCGUCggCUGGu---UCUGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 144766 0.73 0.568603
Target:  5'- uGGGaACGCAGCUGGCC--GGCGUCGc -3'
miRNA:   3'- cUCC-UGCGUCGGCUGGuuCUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 146606 0.72 0.618224
Target:  5'- cGAGcGACGaAGgCGGCgAGGACGUCGAa -3'
miRNA:   3'- -CUC-CUGCgUCgGCUGgUUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 123810 0.72 0.618224
Target:  5'- cGGGGGCGCGGaCGAgCAGGAgcggcgccCGUCGAu -3'
miRNA:   3'- -CUCCUGCGUCgGCUgGUUCU--------GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 139181 0.72 0.628205
Target:  5'- gGAGGGCGUAGCUgucgaaGGCCAuGACGgCGAc -3'
miRNA:   3'- -CUCCUGCGUCGG------CUGGUuCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 152978 0.72 0.638189
Target:  5'- cGGGGCGCuucGCCGAC--AGGCGUCGu -3'
miRNA:   3'- cUCCUGCGu--CGGCUGguUCUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 119767 0.72 0.658136
Target:  5'- cAGGuCGCGGCCGGCCuccAGGCGgcucCGGu -3'
miRNA:   3'- cUCCuGCGUCGGCUGGu--UCUGCa---GCU- -5'
11008 3' -56.6 NC_002794.1 + 42594 0.71 0.677013
Target:  5'- gGAGGGCGCGG-CGGCCGGGAgCGggcucucUCGAc -3'
miRNA:   3'- -CUCCUGCGUCgGCUGGUUCU-GC-------AGCU- -5'
11008 3' -56.6 NC_002794.1 + 118241 0.71 0.687888
Target:  5'- gGAGGAUGUcggcgggcuggaGGUCGGCCGGGGCGgCGGc -3'
miRNA:   3'- -CUCCUGCG------------UCGGCUGGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 110791 0.71 0.697728
Target:  5'- cAGGACGUuGuCCGACCAGGugcGCGUCa- -3'
miRNA:   3'- cUCCUGCGuC-GGCUGGUUC---UGCAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.