miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 153803 0.71 0.697728
Target:  5'- uGAGGACGagAGCCGGCCcGGACcucuuUCGGg -3'
miRNA:   3'- -CUCCUGCg-UCGGCUGGuUCUGc----AGCU- -5'
11008 3' -56.6 NC_002794.1 + 149960 0.71 0.697728
Target:  5'- cGGGACGUGGCCGACCugccgcGGACcggCGGc -3'
miRNA:   3'- cUCCUGCGUCGGCUGGu-----UCUGca-GCU- -5'
11008 3' -56.6 NC_002794.1 + 121331 0.71 0.707516
Target:  5'- cGAGGcgccGCGCGGCUGAgaaaCCGGGAaguuCGUCGAc -3'
miRNA:   3'- -CUCC----UGCGUCGGCU----GGUUCU----GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 101205 0.71 0.717242
Target:  5'- gGAGGAgGCGGCCGcCCGgcAGAUGgUCGu -3'
miRNA:   3'- -CUCCUgCGUCGGCuGGU--UCUGC-AGCu -5'
11008 3' -56.6 NC_002794.1 + 94487 0.71 0.717242
Target:  5'- -cGGACGCGGCCGcggGCCGuGGCGggGAu -3'
miRNA:   3'- cuCCUGCGUCGGC---UGGUuCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 96096 0.71 0.717242
Target:  5'- -cGGGCGUaccuggaaagGGUCGACgGGGugGUCGAc -3'
miRNA:   3'- cuCCUGCG----------UCGGCUGgUUCugCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 153357 0.71 0.7269
Target:  5'- cAGGACGCGGcCCGGCUgcgcgcccucGugGUCGAu -3'
miRNA:   3'- cUCCUGCGUC-GGCUGGuu--------CugCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 43422 0.71 0.7269
Target:  5'- cGGGACG--GCaCGACCAGGAUGUUGGu -3'
miRNA:   3'- cUCCUGCguCG-GCUGGUUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 112331 0.71 0.7269
Target:  5'- cGGGGAgCGC-GCCGGCCGGcGGCGcCGGc -3'
miRNA:   3'- -CUCCU-GCGuCGGCUGGUU-CUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 121392 0.7 0.73648
Target:  5'- cGGGAcCGCGGCCGgcGCCGGGAcCG-CGAc -3'
miRNA:   3'- cUCCU-GCGUCGGC--UGGUUCU-GCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 128337 0.7 0.73648
Target:  5'- -cGGACGCGGUgGACUGAG-CaGUCGAc -3'
miRNA:   3'- cuCCUGCGUCGgCUGGUUCuG-CAGCU- -5'
11008 3' -56.6 NC_002794.1 + 147064 0.7 0.745028
Target:  5'- aAGGACGgAGCCGcgggcGCCcgguccaaggacgAAGGCGUCGGc -3'
miRNA:   3'- cUCCUGCgUCGGC-----UGG-------------UUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 77131 0.7 0.755372
Target:  5'- -cGGAC-CAGCUGGCCgAAGACG-CGGa -3'
miRNA:   3'- cuCCUGcGUCGGCUGG-UUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 158541 0.7 0.755372
Target:  5'- aGAGGACGCGGCCGagaucgucuaacGCCGcucuguaacgaaAGaACGUCa- -3'
miRNA:   3'- -CUCCUGCGUCGGC------------UGGU------------UC-UGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 147775 0.7 0.755372
Target:  5'- uGAGcGACGCGG-CGACCcuGGGCGUCu- -3'
miRNA:   3'- -CUC-CUGCGUCgGCUGGu-UCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 104479 0.7 0.764667
Target:  5'- cAGGAUGCGGgCGGCCAcGGCGgcCGGg -3'
miRNA:   3'- cUCCUGCGUCgGCUGGUuCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 22003 0.7 0.764667
Target:  5'- -----gGCaAGCCGGCCAAGGCGUgCGAa -3'
miRNA:   3'- cuccugCG-UCGGCUGGUUCUGCA-GCU- -5'
11008 3' -56.6 NC_002794.1 + 186401 0.7 0.77385
Target:  5'- --aGcCGCGGCCGcACCAGucGGCGUCGAc -3'
miRNA:   3'- cucCuGCGUCGGC-UGGUU--CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 148132 0.69 0.782913
Target:  5'- -cGGGCGCggGGCCG-CCGGGGCGagGGc -3'
miRNA:   3'- cuCCUGCG--UCGGCuGGUUCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 142317 0.69 0.791847
Target:  5'- gGAGGcggcgGCGCAGgCGGCgGAGGCGgCGGa -3'
miRNA:   3'- -CUCC-----UGCGUCgGCUGgUUCUGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.