miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 143746 0.66 0.92255
Target:  5'- -cGGACGC-GCCG-CCGGGGggcuccgcucguCGUCGGu -3'
miRNA:   3'- cuCCUGCGuCGGCuGGUUCU------------GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 35237 0.66 0.917059
Target:  5'- cGAGGAcaCGCuGGUCGACCucAAGAUcUCGAa -3'
miRNA:   3'- -CUCCU--GCG-UCGGCUGG--UUCUGcAGCU- -5'
11008 3' -56.6 NC_002794.1 + 181735 0.66 0.917059
Target:  5'- -cGGAacacgcgcgaGCGGCCGGCCAGcccgcuGACGcCGAu -3'
miRNA:   3'- cuCCUg---------CGUCGGCUGGUU------CUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 18247 0.66 0.917059
Target:  5'- -cGcGCGCGGCCGACCGGcGAcCG-CGAg -3'
miRNA:   3'- cuCcUGCGUCGGCUGGUU-CU-GCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 100138 0.66 0.916498
Target:  5'- cGGGACGCGGCCGuucgccgaccuguACCuGGugGccugCGGc -3'
miRNA:   3'- cUCCUGCGUCGGC-------------UGGuUCugCa---GCU- -5'
11008 3' -56.6 NC_002794.1 + 128275 0.66 0.913656
Target:  5'- cGAGcGCGgAGCCGAcggccgucuucgacaCCGAGACGgCGAc -3'
miRNA:   3'- -CUCcUGCgUCGGCU---------------GGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 26649 0.66 0.911342
Target:  5'- -cGGACgGCGGCCGGCU----CGUCGGc -3'
miRNA:   3'- cuCCUG-CGUCGGCUGGuucuGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 86536 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 86368 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 86176 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 44446 0.66 0.911342
Target:  5'- --cGGCGC-GCCcGCCcGGACGUCGGc -3'
miRNA:   3'- cucCUGCGuCGGcUGGuUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 91875 0.66 0.911342
Target:  5'- gGGGGugGCGGCggCGGCCGcGACGa--- -3'
miRNA:   3'- -CUCCugCGUCG--GCUGGUuCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 101712 0.66 0.911342
Target:  5'- cGAGGACGUGuucguggugcacGUgGGCCAGGGCGU-GAg -3'
miRNA:   3'- -CUCCUGCGU------------CGgCUGGUUCUGCAgCU- -5'
11008 3' -56.6 NC_002794.1 + 92432 0.66 0.911342
Target:  5'- cGAGGAcaCGCuGGCCGugCGGGGCcgcgCGGa -3'
miRNA:   3'- -CUCCU--GCG-UCGGCugGUUCUGca--GCU- -5'
11008 3' -56.6 NC_002794.1 + 116512 0.67 0.905399
Target:  5'- cGAGGcagGCGUAGCCGuCCAGGucccgggucucCGUCGu -3'
miRNA:   3'- -CUCC---UGCGUCGGCuGGUUCu----------GCAGCu -5'
11008 3' -56.6 NC_002794.1 + 107064 0.67 0.905399
Target:  5'- -cGGGCGCGGCgCcGCCGGcAUGUCGGa -3'
miRNA:   3'- cuCCUGCGUCG-GcUGGUUcUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 182457 0.67 0.905399
Target:  5'- gGAGaGCGCGGCgGugCGcGGCGUCa- -3'
miRNA:   3'- -CUCcUGCGUCGgCugGUuCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 120139 0.67 0.905399
Target:  5'- cGGGGACG-GGCCGguGCC-GGACGaCGAg -3'
miRNA:   3'- -CUCCUGCgUCGGC--UGGuUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 153438 0.67 0.899234
Target:  5'- -uGGGCGUGGacgaucgaaCCGACCGAGAuCGUCu- -3'
miRNA:   3'- cuCCUGCGUC---------GGCUGGUUCU-GCAGcu -5'
11008 3' -56.6 NC_002794.1 + 53187 0.67 0.899234
Target:  5'- cAGGGCcCAGCCGAgCCAcccGGAcucgucguCGUCGAg -3'
miRNA:   3'- cUCCUGcGUCGGCU-GGU---UCU--------GCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.