miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 147162 0.67 0.895428
Target:  5'- cGAGGGC-CAGCUggaccgacugaacguGugCGAGugGUUGAa -3'
miRNA:   3'- -CUCCUGcGUCGG---------------CugGUUCugCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 55343 0.67 0.892848
Target:  5'- cGGGGucGCGCccgAGgCGGCCGAGGCGgcCGAg -3'
miRNA:   3'- -CUCC--UGCG---UCgGCUGGUUCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 81098 0.67 0.892848
Target:  5'- --uGACGCAGCCcggaGACUGuuucGACGUCGGc -3'
miRNA:   3'- cucCUGCGUCGG----CUGGUu---CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 70230 0.67 0.892848
Target:  5'- -cGGGCggGCGGCCGGCCGccccgcagcAGACGcgcagCGAc -3'
miRNA:   3'- cuCCUG--CGUCGGCUGGU---------UCUGCa----GCU- -5'
11008 3' -56.6 NC_002794.1 + 135462 0.67 0.892848
Target:  5'- cGGGGccCGCGGCCGACgAcGACGcCGc -3'
miRNA:   3'- -CUCCu-GCGUCGGCUGgUuCUGCaGCu -5'
11008 3' -56.6 NC_002794.1 + 112169 0.67 0.892848
Target:  5'- cGAGGcucuGCGCGGCC-AgCAGGuuGUCGAg -3'
miRNA:   3'- -CUCC----UGCGUCGGcUgGUUCugCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 98379 0.67 0.886244
Target:  5'- cGGGaGACGUGaucgcGuuGGCCAAGuGCGUCGAg -3'
miRNA:   3'- -CUC-CUGCGU-----CggCUGGUUC-UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 126702 0.67 0.886244
Target:  5'- aGGGGCGCcGCgGACuCGGGGCGagGGg -3'
miRNA:   3'- cUCCUGCGuCGgCUG-GUUCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 182235 0.67 0.879427
Target:  5'- cAGGcCGCAGCaGGCCAGGAgGagCGAc -3'
miRNA:   3'- cUCCuGCGUCGgCUGGUUCUgCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 48590 0.67 0.879427
Target:  5'- gGAGGA-GCGGCgCGucGCCGucGGCGUCGGc -3'
miRNA:   3'- -CUCCUgCGUCG-GC--UGGUu-CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 34764 0.68 0.8724
Target:  5'- uGGGACGCGGCaCGGCCGcccgcgccAGccgaGUCGGc -3'
miRNA:   3'- cUCCUGCGUCG-GCUGGU--------UCug--CAGCU- -5'
11008 3' -56.6 NC_002794.1 + 58418 0.68 0.8724
Target:  5'- aAGG-UGCGGCCG-CCGccAGACGcCGAg -3'
miRNA:   3'- cUCCuGCGUCGGCuGGU--UCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 54488 0.68 0.8724
Target:  5'- -cGGugGCGGCUuugaACCAAccGACGUUGAc -3'
miRNA:   3'- cuCCugCGUCGGc---UGGUU--CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 185766 0.68 0.8724
Target:  5'- --cGGCGCGGCCGcCCGucacACGUCGGc -3'
miRNA:   3'- cucCUGCGUCGGCuGGUuc--UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 108478 0.68 0.865168
Target:  5'- cGAGGG-GCGaCCGGCCAAGAuCGUCc- -3'
miRNA:   3'- -CUCCUgCGUcGGCUGGUUCU-GCAGcu -5'
11008 3' -56.6 NC_002794.1 + 116887 0.68 0.865168
Target:  5'- gGGGGGCGcCGGCgccgucuccggCGGCCGGuccGGCGUCGGc -3'
miRNA:   3'- -CUCCUGC-GUCG-----------GCUGGUU---CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 31177 0.68 0.865168
Target:  5'- aGGaGAUGCGGUCGAUgAAGAUGUCc- -3'
miRNA:   3'- cUC-CUGCGUCGGCUGgUUCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 148485 0.68 0.857737
Target:  5'- cGGGGACGcCAGCCauuUCGAGuuagcCGUCGAc -3'
miRNA:   3'- -CUCCUGC-GUCGGcu-GGUUCu----GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 95553 0.68 0.857737
Target:  5'- cGAGG-CGCAGCUGgGCgAGGACGagCGGc -3'
miRNA:   3'- -CUCCuGCGUCGGC-UGgUUCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 82490 0.68 0.857737
Target:  5'- --cGACGCGGCCcGCCGcGACGcgCGAg -3'
miRNA:   3'- cucCUGCGUCGGcUGGUuCUGCa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.