miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 9058 0.66 0.93285
Target:  5'- cGAGGcggugGCGCAGgCGAuCCGAGAC-UUGGa -3'
miRNA:   3'- -CUCC-----UGCGUCgGCU-GGUUCUGcAGCU- -5'
11008 3' -56.6 NC_002794.1 + 10950 0.76 0.446104
Target:  5'- cAGGAacccggaGgGGCCGGCCGAGACGUcCGAu -3'
miRNA:   3'- cUCCUg------CgUCGGCUGGUUCUGCA-GCU- -5'
11008 3' -56.6 NC_002794.1 + 11337 0.66 0.93285
Target:  5'- cGA-GACGCAGgCGAUCuccGGCGUCGc -3'
miRNA:   3'- -CUcCUGCGUCgGCUGGuu-CUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 12020 0.66 0.927814
Target:  5'- ---uGCGCcGCCGGCCcGGGCGUCc- -3'
miRNA:   3'- cuccUGCGuCGGCUGGuUCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 18247 0.66 0.917059
Target:  5'- -cGcGCGCGGCCGACCGGcGAcCG-CGAg -3'
miRNA:   3'- cuCcUGCGUCGGCUGGUU-CU-GCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 22003 0.7 0.764667
Target:  5'- -----gGCaAGCCGGCCAAGGCGUgCGAa -3'
miRNA:   3'- cuccugCG-UCGGCUGGUUCUGCA-GCU- -5'
11008 3' -56.6 NC_002794.1 + 22608 0.74 0.520035
Target:  5'- cGGGACGCucgAGCCGAUCGGGcCGcUCGAg -3'
miRNA:   3'- cUCCUGCG---UCGGCUGGUUCuGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 26649 0.66 0.911342
Target:  5'- -cGGACgGCGGCCGGCU----CGUCGGc -3'
miRNA:   3'- cuCCUG-CGUCGGCUGGuucuGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 31050 0.66 0.927814
Target:  5'- uAGGGCaGCGGCacggCGGCCAgcucgcgcAGcACGUCGAg -3'
miRNA:   3'- cUCCUG-CGUCG----GCUGGU--------UC-UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 31177 0.68 0.865168
Target:  5'- aGGaGAUGCGGUCGAUgAAGAUGUCc- -3'
miRNA:   3'- cUC-CUGCGUCGGCUGgUUCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 32641 0.66 0.93285
Target:  5'- gGGGGGCGa---CGACCGGGGCGaCGGc -3'
miRNA:   3'- -CUCCUGCgucgGCUGGUUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 34764 0.68 0.8724
Target:  5'- uGGGACGCGGCaCGGCCGcccgcgccAGccgaGUCGGc -3'
miRNA:   3'- cUCCUGCGUCG-GCUGGU--------UCug--CAGCU- -5'
11008 3' -56.6 NC_002794.1 + 35237 0.66 0.917059
Target:  5'- cGAGGAcaCGCuGGUCGACCucAAGAUcUCGAa -3'
miRNA:   3'- -CUCCU--GCG-UCGGCUGG--UUCUGcAGCU- -5'
11008 3' -56.6 NC_002794.1 + 37147 0.68 0.850111
Target:  5'- cGAGGGCGCAGCUccagucgcuccgGAUCGGGACcUCc- -3'
miRNA:   3'- -CUCCUGCGUCGG------------CUGGUUCUGcAGcu -5'
11008 3' -56.6 NC_002794.1 + 37230 0.69 0.817794
Target:  5'- -cGGACcucGCCGAUCAGGuCGUCGAc -3'
miRNA:   3'- cuCCUGcguCGGCUGGUUCuGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 42594 0.71 0.677013
Target:  5'- gGAGGGCGCGG-CGGCCGGGAgCGggcucucUCGAc -3'
miRNA:   3'- -CUCCUGCGUCgGCUGGUUCU-GC-------AGCU- -5'
11008 3' -56.6 NC_002794.1 + 43422 0.71 0.7269
Target:  5'- cGGGACG--GCaCGACCAGGAUGUUGGu -3'
miRNA:   3'- cUCCUGCguCG-GCUGGUUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 43620 0.69 0.809295
Target:  5'- cAGGACGUGGCCG-CCAGGAgcugGUgGAa -3'
miRNA:   3'- cUCCUGCGUCGGCuGGUUCUg---CAgCU- -5'
11008 3' -56.6 NC_002794.1 + 44446 0.66 0.911342
Target:  5'- --cGGCGC-GCCcGCCcGGACGUCGGc -3'
miRNA:   3'- cucCUGCGuCGGcUGGuUCUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 48590 0.67 0.879427
Target:  5'- gGAGGA-GCGGCgCGucGCCGucGGCGUCGGc -3'
miRNA:   3'- -CUCCUgCGUCG-GC--UGGUu-CUGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.