miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 53187 0.67 0.899234
Target:  5'- cAGGGCcCAGCCGAgCCAcccGGAcucgucguCGUCGAg -3'
miRNA:   3'- cUCCUGcGUCGGCU-GGU---UCU--------GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 54488 0.68 0.8724
Target:  5'- -cGGugGCGGCUuugaACCAAccGACGUUGAc -3'
miRNA:   3'- cuCCugCGUCGGc---UGGUU--CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 55343 0.67 0.892848
Target:  5'- cGGGGucGCGCccgAGgCGGCCGAGGCGgcCGAg -3'
miRNA:   3'- -CUCC--UGCG---UCgGCUGGUUCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 55382 0.66 0.92255
Target:  5'- cGAGGcggccgAgGCGGCCGaggcgGCCGAGGCGgcCGAg -3'
miRNA:   3'- -CUCC------UgCGUCGGC-----UGGUUCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 58418 0.68 0.8724
Target:  5'- aAGG-UGCGGCCG-CCGccAGACGcCGAg -3'
miRNA:   3'- cUCCuGCGUCGGCuGGU--UCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 63475 0.66 0.93285
Target:  5'- cGAGG-CgGCGGCCGccgucgacgacGCCGcGGCGUCGu -3'
miRNA:   3'- -CUCCuG-CGUCGGC-----------UGGUuCUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 70069 0.66 0.93285
Target:  5'- -cGGcCGCAGCCGcAgCAAGGCGaCGc -3'
miRNA:   3'- cuCCuGCGUCGGC-UgGUUCUGCaGCu -5'
11008 3' -56.6 NC_002794.1 + 70230 0.67 0.892848
Target:  5'- -cGGGCggGCGGCCGGCCGccccgcagcAGACGcgcagCGAc -3'
miRNA:   3'- cuCCUG--CGUCGGCUGGU---------UCUGCa----GCU- -5'
11008 3' -56.6 NC_002794.1 + 77131 0.7 0.755372
Target:  5'- -cGGAC-CAGCUGGCCgAAGACG-CGGa -3'
miRNA:   3'- cuCCUGcGUCGGCUGG-UUCUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 81098 0.67 0.892848
Target:  5'- --uGACGCAGCCcggaGACUGuuucGACGUCGGc -3'
miRNA:   3'- cucCUGCGUCGG----CUGGUu---CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 82490 0.68 0.857737
Target:  5'- --cGACGCGGCCcGCCGcGACGcgCGAg -3'
miRNA:   3'- cucCUGCGUCGGcUGGUuCUGCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 86176 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 86368 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 86536 0.66 0.911342
Target:  5'- -cGGAUGCcccgGGCCGAgCCGGGACGg--- -3'
miRNA:   3'- cuCCUGCG----UCGGCU-GGUUCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 89333 0.69 0.817794
Target:  5'- cGGGGACGCGGCggcgaGACCuccgAGGAC-UCGGu -3'
miRNA:   3'- -CUCCUGCGUCGg----CUGG----UUCUGcAGCU- -5'
11008 3' -56.6 NC_002794.1 + 89935 0.69 0.817794
Target:  5'- -cGGGCGCcggcuucucgggAGCCGACguCGAGGCGuUCGGa -3'
miRNA:   3'- cuCCUGCG------------UCGGCUG--GUUCUGC-AGCU- -5'
11008 3' -56.6 NC_002794.1 + 91875 0.66 0.911342
Target:  5'- gGGGGugGCGGCggCGGCCGcGACGa--- -3'
miRNA:   3'- -CUCCugCGUCG--GCUGGUuCUGCagcu -5'
11008 3' -56.6 NC_002794.1 + 92432 0.66 0.911342
Target:  5'- cGAGGAcaCGCuGGCCGugCGGGGCcgcgCGGa -3'
miRNA:   3'- -CUCCU--GCG-UCGGCugGUUCUGca--GCU- -5'
11008 3' -56.6 NC_002794.1 + 94487 0.71 0.717242
Target:  5'- -cGGACGCGGCCGcggGCCGuGGCGggGAu -3'
miRNA:   3'- cuCCUGCGUCGGC---UGGUuCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 95553 0.68 0.857737
Target:  5'- cGAGG-CGCAGCUGgGCgAGGACGagCGGc -3'
miRNA:   3'- -CUCCuGCGUCGGC-UGgUUCUGCa-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.