miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 3' -56.6 NC_002794.1 + 188045 0.66 0.93285
Target:  5'- -cGGACGCGGCgagucucgacuuCGGCCA--GCGUCa- -3'
miRNA:   3'- cuCCUGCGUCG------------GCUGGUucUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 187496 0.76 0.411396
Target:  5'- cGAGGccGCGCAGgCGGCCAGGGCGcccgCGGa -3'
miRNA:   3'- -CUCC--UGCGUCgGCUGGUUCUGCa---GCU- -5'
11008 3' -56.6 NC_002794.1 + 186401 0.7 0.77385
Target:  5'- --aGcCGCGGCCGcACCAGucGGCGUCGAc -3'
miRNA:   3'- cucCuGCGUCGGC-UGGUU--CUGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 185766 0.68 0.8724
Target:  5'- --cGGCGCGGCCGcCCGucacACGUCGGc -3'
miRNA:   3'- cucCUGCGUCGGCuGGUuc--UGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 185402 0.75 0.46406
Target:  5'- cGAGGGCGCGGgcCCGACCGc--CGUCGAc -3'
miRNA:   3'- -CUCCUGCGUC--GGCUGGUucuGCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 185266 0.76 0.419916
Target:  5'- -cGGACGCcGCCGGCCGAGugGgccgcCGGa -3'
miRNA:   3'- cuCCUGCGuCGGCUGGUUCugCa----GCU- -5'
11008 3' -56.6 NC_002794.1 + 182457 0.67 0.905399
Target:  5'- gGAGaGCGCGGCgGugCGcGGCGUCa- -3'
miRNA:   3'- -CUCcUGCGUCGgCugGUuCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 182235 0.67 0.879427
Target:  5'- cAGGcCGCAGCaGGCCAGGAgGagCGAc -3'
miRNA:   3'- cUCCuGCGUCGgCUGGUUCUgCa-GCU- -5'
11008 3' -56.6 NC_002794.1 + 181735 0.66 0.917059
Target:  5'- -cGGAacacgcgcgaGCGGCCGGCCAGcccgcuGACGcCGAu -3'
miRNA:   3'- cuCCUg---------CGUCGGCUGGUU------CUGCaGCU- -5'
11008 3' -56.6 NC_002794.1 + 180378 0.77 0.392211
Target:  5'- cGAGGACGCuGCCGGCCAgcugcucgaacgggAccGACGUCGc -3'
miRNA:   3'- -CUCCUGCGuCGGCUGGU--------------U--CUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 158541 0.7 0.755372
Target:  5'- aGAGGACGCGGCCGagaucgucuaacGCCGcucuguaacgaaAGaACGUCa- -3'
miRNA:   3'- -CUCCUGCGUCGGC------------UGGU------------UC-UGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 153803 0.71 0.697728
Target:  5'- uGAGGACGagAGCCGGCCcGGACcucuuUCGGg -3'
miRNA:   3'- -CUCCUGCg-UCGGCUGGuUCUGc----AGCU- -5'
11008 3' -56.6 NC_002794.1 + 153438 0.67 0.899234
Target:  5'- -uGGGCGUGGacgaucgaaCCGACCGAGAuCGUCu- -3'
miRNA:   3'- cuCCUGCGUC---------GGCUGGUUCU-GCAGcu -5'
11008 3' -56.6 NC_002794.1 + 153357 0.71 0.7269
Target:  5'- cAGGACGCGGcCCGGCUgcgcgcccucGugGUCGAu -3'
miRNA:   3'- cUCCUGCGUC-GGCUGGuu--------CugCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 152978 0.72 0.638189
Target:  5'- cGGGGCGCuucGCCGAC--AGGCGUCGu -3'
miRNA:   3'- cUCCUGCGu--CGGCUGguUCUGCAGCu -5'
11008 3' -56.6 NC_002794.1 + 149960 0.71 0.697728
Target:  5'- cGGGACGUGGCCGACCugccgcGGACcggCGGc -3'
miRNA:   3'- cUCCUGCGUCGGCUGGu-----UCUGca-GCU- -5'
11008 3' -56.6 NC_002794.1 + 148485 0.68 0.857737
Target:  5'- cGGGGACGcCAGCCauuUCGAGuuagcCGUCGAc -3'
miRNA:   3'- -CUCCUGC-GUCGGcu-GGUUCu----GCAGCU- -5'
11008 3' -56.6 NC_002794.1 + 148132 0.69 0.782913
Target:  5'- -cGGGCGCggGGCCG-CCGGGGCGagGGc -3'
miRNA:   3'- cuCCUGCG--UCGGCuGGUUCUGCagCU- -5'
11008 3' -56.6 NC_002794.1 + 147775 0.7 0.755372
Target:  5'- uGAGcGACGCGG-CGACCcuGGGCGUCu- -3'
miRNA:   3'- -CUC-CUGCGUCgGCUGGu-UCUGCAGcu -5'
11008 3' -56.6 NC_002794.1 + 147162 0.67 0.895428
Target:  5'- cGAGGGC-CAGCUggaccgacugaacguGugCGAGugGUUGAa -3'
miRNA:   3'- -CUCCUGcGUCGG---------------CugGUUCugCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.