miRNA display CGI


Results 1 - 20 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 185402 0.66 0.609664
Target:  5'- cGagGGCGCgGgC-CCGaCCGCCGUCGa -3'
miRNA:   3'- uCagCUGCGgCgGuGGC-GGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 132893 0.66 0.609664
Target:  5'- --cCG-CGCCGCCcggACCuGCgGCgGCCGg -3'
miRNA:   3'- ucaGCuGCGGCGG---UGG-CGgCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 185980 0.66 0.609664
Target:  5'- --cCGGguCCGCCACCGUCuccuCCGCCGg -3'
miRNA:   3'- ucaGCUgcGGCGGUGGCGGc---GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 38456 0.66 0.609664
Target:  5'- gAGcCGGCGCgGCCGCgGCgCGCC-CUu -3'
miRNA:   3'- -UCaGCUGCGgCGGUGgCG-GCGGcGGc -5'
11008 5' -65.2 NC_002794.1 + 151777 0.66 0.609664
Target:  5'- gAGaCcGCGCCGCUGCaCGCCagaCGCCGg -3'
miRNA:   3'- -UCaGcUGCGGCGGUG-GCGGcg-GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 98967 0.66 0.609664
Target:  5'- ---gGGCGCCGUCGgCGgCGCCGUgGc -3'
miRNA:   3'- ucagCUGCGGCGGUgGCgGCGGCGgC- -5'
11008 5' -65.2 NC_002794.1 + 48453 0.66 0.608726
Target:  5'- -aUCGGgacacaGCCGCCACgucagggCGaaGCCGCCGg -3'
miRNA:   3'- ucAGCUg-----CGGCGGUG-------GCggCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 105999 0.66 0.608726
Target:  5'- gAGcCGAUGCUGCC-CCGCguguacgagauuaUGuuGCCGu -3'
miRNA:   3'- -UCaGCUGCGGCGGuGGCG-------------GCggCGGC- -5'
11008 5' -65.2 NC_002794.1 + 10 0.66 0.601229
Target:  5'- ---aGACGCgGCCGCgaacacgaaaacgagGCCGCCGCgGg -3'
miRNA:   3'- ucagCUGCGgCGGUGg--------------CGGCGGCGgC- -5'
11008 5' -65.2 NC_002794.1 + 36757 0.66 0.600293
Target:  5'- cGGUCcuGGCGgaCgGCCACCcagcuguaGCCgGCCGCCGu -3'
miRNA:   3'- -UCAG--CUGC--GgCGGUGG--------CGG-CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 59211 0.66 0.600293
Target:  5'- cGUCGGCGUCuCgGCCGCgGCgCGCg- -3'
miRNA:   3'- uCAGCUGCGGcGgUGGCGgCG-GCGgc -5'
11008 5' -65.2 NC_002794.1 + 63210 0.66 0.600293
Target:  5'- cGUCGACcugcgcgaccuGCCGCCccugcGCCuCCGC-GCCGa -3'
miRNA:   3'- uCAGCUG-----------CGGCGG-----UGGcGGCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 137472 0.66 0.600293
Target:  5'- uGUCGGCgGCCucguagagcagcGCCACgGUCGguuccuCCGCCGg -3'
miRNA:   3'- uCAGCUG-CGG------------CGGUGgCGGC------GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 126379 0.66 0.600293
Target:  5'- cGUgGGCGCCgggGCCugCGCgGCgGCg- -3'
miRNA:   3'- uCAgCUGCGG---CGGugGCGgCGgCGgc -5'
11008 5' -65.2 NC_002794.1 + 193296 0.66 0.600293
Target:  5'- uAGUCGcCGuCCGCUccgcGCCGCaCGCagCGCCc -3'
miRNA:   3'- -UCAGCuGC-GGCGG----UGGCG-GCG--GCGGc -5'
11008 5' -65.2 NC_002794.1 + 16903 0.66 0.600293
Target:  5'- --nCGACaGCCGCgAuCCGa-GCCGCCGa -3'
miRNA:   3'- ucaGCUG-CGGCGgU-GGCggCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 33314 0.66 0.600293
Target:  5'- gGG-CGGCGuccauCCGCCACaCGCUGCaguCGCUGg -3'
miRNA:   3'- -UCaGCUGC-----GGCGGUG-GCGGCG---GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 48638 0.66 0.600293
Target:  5'- cGUCGGgGcCCGCgaGCCGCCGCagacucagGCCc -3'
miRNA:   3'- uCAGCUgC-GGCGg-UGGCGGCGg-------CGGc -5'
11008 5' -65.2 NC_002794.1 + 121803 0.66 0.600293
Target:  5'- --gCGACcgGCCGgCGCCuGCCGCUGCa- -3'
miRNA:   3'- ucaGCUG--CGGCgGUGG-CGGCGGCGgc -5'
11008 5' -65.2 NC_002794.1 + 61821 0.66 0.600293
Target:  5'- --cCGGCgGCCGCCgGCgGCCGgCGUCa -3'
miRNA:   3'- ucaGCUG-CGGCGG-UGgCGGCgGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.