miRNA display CGI


Results 1 - 20 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 121238 0.96 0.00628
Target:  5'- cAGUCGcCGCUGCCGCCGCCGCCGCCGc -3'
miRNA:   3'- -UCAGCuGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 52903 0.92 0.010989
Target:  5'- --gCGGCGCCGCCGCCGUCGCCGCCGc -3'
miRNA:   3'- ucaGCUGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 194043 0.92 0.012476
Target:  5'- --cCGcCGCCGCCGCCGCCGCCGCCGa -3'
miRNA:   3'- ucaGCuGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 81550 0.92 0.012476
Target:  5'- uGGaCGGCuGCCGCCGCCGCCGCCGCCGc -3'
miRNA:   3'- -UCaGCUG-CGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 11798 0.91 0.014528
Target:  5'- uGUCcguGGCGCCGCCGCCGCCGUCGCCGc -3'
miRNA:   3'- uCAG---CUGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 187545 0.89 0.017792
Target:  5'- --gCGAcCGCCGCCACCGCCGCCGUCGg -3'
miRNA:   3'- ucaGCU-GCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16554 0.89 0.019686
Target:  5'- cGUCGcCaCCGCCACCGCCGCCGCCGc -3'
miRNA:   3'- uCAGCuGcGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 107186 0.89 0.02014
Target:  5'- gAGcCGGCGCCGCCGCCGCCggccucgcccggcGCCGCCGg -3'
miRNA:   3'- -UCaGCUGCGGCGGUGGCGG-------------CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 105910 0.88 0.021237
Target:  5'- cGG-CGGCGgCGCUACCGCCGCCGCCGg -3'
miRNA:   3'- -UCaGCUGCgGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16488 0.88 0.022338
Target:  5'- cGcCGccucCGCCGCCACCGCCGCCGCCGu -3'
miRNA:   3'- uCaGCu---GCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 32287 0.88 0.023495
Target:  5'- gAG-CGACGCCGCCGCCGCCGCggcggccgCGCCGg -3'
miRNA:   3'- -UCaGCUGCGGCGGUGGCGGCG--------GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 129007 0.87 0.024711
Target:  5'- cGGUCGAC-CCGCuCACCGUCGCCGCCGu -3'
miRNA:   3'- -UCAGCUGcGGCG-GUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 53745 0.87 0.025342
Target:  5'- cGGcCGcCGCUGCCGCCGCCGCUGCCGg -3'
miRNA:   3'- -UCaGCuGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 111619 0.87 0.027332
Target:  5'- cGG-CGGgGCCGCCGCgGCCGCCGCCGg -3'
miRNA:   3'- -UCaGCUgCGGCGGUGgCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 186362 0.86 0.032595
Target:  5'- --cCGACcaGCCGCCGCCGCCGCCGUCGu -3'
miRNA:   3'- ucaGCUG--CGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 186063 0.86 0.033424
Target:  5'- cGGUcCGugGCCaCCGCCGCCGCCGCCu -3'
miRNA:   3'- -UCA-GCugCGGcGGUGGCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 38534 0.85 0.034274
Target:  5'- aGGUCGcCGCCGCCGCCGCCuccCCGCCa -3'
miRNA:   3'- -UCAGCuGCGGCGGUGGCGGc--GGCGGc -5'
11008 5' -65.2 NC_002794.1 + 192313 0.85 0.03789
Target:  5'- cGUCcGCGCuCGCCGCCGCCGCCGCUu -3'
miRNA:   3'- uCAGcUGCG-GCGGUGGCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 124468 0.85 0.03789
Target:  5'- cGUCGGCGUCGCCGCCGCaCGCCcggaccGCCGg -3'
miRNA:   3'- uCAGCUGCGGCGGUGGCG-GCGG------CGGC- -5'
11008 5' -65.2 NC_002794.1 + 146985 0.84 0.042619
Target:  5'- aGGUCGGCGCCGCCggccgacgucggcgGCgGCgGCCGCCGg -3'
miRNA:   3'- -UCAGCUGCGGCGG--------------UGgCGgCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.