miRNA display CGI


Results 21 - 40 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 103942 0.84 0.044025
Target:  5'- --gCGugGCCGCCGCCGCUcgccaGCCGCCGg -3'
miRNA:   3'- ucaGCugCGGCGGUGGCGG-----CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 63909 0.84 0.044025
Target:  5'- cGUCGcucGCGCCGCgACCGCCGCCcgGCCGg -3'
miRNA:   3'- uCAGC---UGCGGCGgUGGCGGCGG--CGGC- -5'
11008 5' -65.2 NC_002794.1 + 17636 0.83 0.051127
Target:  5'- gAG-CGAuccCGCCGCCGCgGCCGCCGCCa -3'
miRNA:   3'- -UCaGCU---GCGGCGGUGgCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 12175 0.83 0.052415
Target:  5'- cGUCGcCGCCGaCGCCGCCGCgGCCGg -3'
miRNA:   3'- uCAGCuGCGGCgGUGGCGGCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 56538 0.83 0.05427
Target:  5'- cGGUCGccauccggagcgcuCGCCGCCGCCcCCGCCGCCGa -3'
miRNA:   3'- -UCAGCu-------------GCGGCGGUGGcGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 128855 0.82 0.057887
Target:  5'- cGUCGACGaCGCCGCUGCCGCCGUg- -3'
miRNA:   3'- uCAGCUGCgGCGGUGGCGGCGGCGgc -5'
11008 5' -65.2 NC_002794.1 + 193393 0.82 0.060827
Target:  5'- cGUCGuccgccucGCGCuCGCCuCCGCCGCCGCCGc -3'
miRNA:   3'- uCAGC--------UGCG-GCGGuGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 187583 0.82 0.06391
Target:  5'- cGUCGGCGCgGCCGCCGUCGCgaCGCCc -3'
miRNA:   3'- uCAGCUGCGgCGGUGGCGGCG--GCGGc -5'
11008 5' -65.2 NC_002794.1 + 60663 0.82 0.06391
Target:  5'- --cCGGCGCgCGCCGCCGCCGCCuCCGu -3'
miRNA:   3'- ucaGCUGCG-GCGGUGGCGGCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 83779 0.81 0.065509
Target:  5'- --aCGACGCCGCCGCCG-CGuCCGCCGu -3'
miRNA:   3'- ucaGCUGCGGCGGUGGCgGC-GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 121364 0.81 0.065509
Target:  5'- cGUCGACGgCGUCcgaGCCgGCCGCCGCCGg -3'
miRNA:   3'- uCAGCUGCgGCGG---UGG-CGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 186924 0.81 0.067145
Target:  5'- cAGUaguGCGCCGCCACCGCCGCCacgGCCc -3'
miRNA:   3'- -UCAgc-UGCGGCGGUGGCGGCGG---CGGc -5'
11008 5' -65.2 NC_002794.1 + 137563 0.81 0.067145
Target:  5'- cGUCG-CGCCGCCGUCGCCGCCgggGCCGg -3'
miRNA:   3'- uCAGCuGCGGCGGUGGCGGCGG---CGGC- -5'
11008 5' -65.2 NC_002794.1 + 189864 0.81 0.067145
Target:  5'- cGUCGGCGUCGUCGCCGCCGaCCgGCCc -3'
miRNA:   3'- uCAGCUGCGGCGGUGGCGGC-GG-CGGc -5'
11008 5' -65.2 NC_002794.1 + 183445 0.81 0.068821
Target:  5'- --cCGGCGcCCGCCACCGCCGgCGCCc -3'
miRNA:   3'- ucaGCUGC-GGCGGUGGCGGCgGCGGc -5'
11008 5' -65.2 NC_002794.1 + 80428 0.81 0.068821
Target:  5'- gGG-CGGgGCCGCCGCCgGCgGCCGCCGg -3'
miRNA:   3'- -UCaGCUgCGGCGGUGG-CGgCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 118667 0.81 0.070537
Target:  5'- uGGgcgCGACGcCCGCgGCCGCCGCCGgCGg -3'
miRNA:   3'- -UCa--GCUGC-GGCGgUGGCGGCGGCgGC- -5'
11008 5' -65.2 NC_002794.1 + 28689 0.81 0.072294
Target:  5'- cGUCGcCGCCGCCguuGCUGCUGCUGCCGu -3'
miRNA:   3'- uCAGCuGCGGCGG---UGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16520 0.81 0.072294
Target:  5'- --cCGGCGUCGCCACCGCCGUCcCCGg -3'
miRNA:   3'- ucaGCUGCGGCGGUGGCGGCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 63708 0.81 0.072294
Target:  5'- --aCGGCGCCGgCGCCGCCGgaCCGCCGa -3'
miRNA:   3'- ucaGCUGCGGCgGUGGCGGC--GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.