miRNA display CGI


Results 21 - 40 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 11076 0.66 0.600293
Target:  5'- uGGU--ACGCCGCCugCcUCGUCGUCGg -3'
miRNA:   3'- -UCAgcUGCGGCGGugGcGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 12037 0.66 0.599357
Target:  5'- cGUCcGCGCCuuccccuGCCgguaucucuggGCCG-CGCCGCCGa -3'
miRNA:   3'- uCAGcUGCGG-------CGG-----------UGGCgGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 113672 0.66 0.599357
Target:  5'- cAGcgCGGCGagcaggcCCGCCACCGUCGgcagCGCCa -3'
miRNA:   3'- -UCa-GCUGC-------GGCGGUGGCGGCg---GCGGc -5'
11008 5' -65.2 NC_002794.1 + 880 0.66 0.597485
Target:  5'- cGGUCGGCGUgcgcgcgggccgggUGCCAaCGCCGCuccccgCGCCu -3'
miRNA:   3'- -UCAGCUGCG--------------GCGGUgGCGGCG------GCGGc -5'
11008 5' -65.2 NC_002794.1 + 116915 0.66 0.590942
Target:  5'- nGGUcCGGCGUCGgCuCCGgCGUCGUCGg -3'
miRNA:   3'- -UCA-GCUGCGGCgGuGGCgGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 14157 0.66 0.590942
Target:  5'- cGUCGA-GCC-CCGCCGCCugaaccugcGCCuCCGa -3'
miRNA:   3'- uCAGCUgCGGcGGUGGCGG---------CGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 129785 0.66 0.590942
Target:  5'- --gCGACGgCGUCGCCGgaauUCGCUGUCGg -3'
miRNA:   3'- ucaGCUGCgGCGGUGGC----GGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 51364 0.66 0.590942
Target:  5'- --cCGAgGCgGCCGCC-CCGuCCgGCCGg -3'
miRNA:   3'- ucaGCUgCGgCGGUGGcGGC-GG-CGGC- -5'
11008 5' -65.2 NC_002794.1 + 113534 0.66 0.590942
Target:  5'- cGGcUCGGCGUCGCCGgcCCGgaGCaggCGCCGg -3'
miRNA:   3'- -UC-AGCUGCGGCGGU--GGCggCG---GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 103004 0.66 0.590942
Target:  5'- -cUCGACucgaGCCGCUAgcCCGCCcGCCaGCCc -3'
miRNA:   3'- ucAGCUG----CGGCGGU--GGCGG-CGG-CGGc -5'
11008 5' -65.2 NC_002794.1 + 96733 0.66 0.590942
Target:  5'- cGG-CGACGaCCGCCGgCGCgucucgcaaGCgGCCGg -3'
miRNA:   3'- -UCaGCUGC-GGCGGUgGCGg--------CGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 56309 0.66 0.590942
Target:  5'- cGGUCGcgguCGCUgGCgGCCGUgGCCGgCGa -3'
miRNA:   3'- -UCAGCu---GCGG-CGgUGGCGgCGGCgGC- -5'
11008 5' -65.2 NC_002794.1 + 193757 0.66 0.590942
Target:  5'- gAG-CGAcCGCCgGCC-CCGCuCGCuCGCCc -3'
miRNA:   3'- -UCaGCU-GCGG-CGGuGGCG-GCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 11829 0.66 0.590942
Target:  5'- -uUCGcucccccccuCGCCGCgACCuCCGaCCGCCGg -3'
miRNA:   3'- ucAGCu---------GCGGCGgUGGcGGC-GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 124832 0.66 0.590942
Target:  5'- uGUCGGCGaCCaucugCAUgGCgGCCGCCGa -3'
miRNA:   3'- uCAGCUGC-GGcg---GUGgCGgCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 143034 0.66 0.590942
Target:  5'- gGGUCGACGUgcaggGCCGCCagguugagGCCGUagCGCCc -3'
miRNA:   3'- -UCAGCUGCGg----CGGUGG--------CGGCG--GCGGc -5'
11008 5' -65.2 NC_002794.1 + 66368 0.66 0.585343
Target:  5'- cAGUCGuCGCCGCUcucGucgaacgcgggcuccCCGUCGucCCGCCGa -3'
miRNA:   3'- -UCAGCuGCGGCGG---U---------------GGCGGC--GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 32501 0.66 0.581616
Target:  5'- -cUCGACGUCuuGCCGgcucCCGCCG-UGCCGg -3'
miRNA:   3'- ucAGCUGCGG--CGGU----GGCGGCgGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 185133 0.66 0.581616
Target:  5'- cAGgCGGCGCCGCgucgagaagAUCGCCGacgcguccuCCGCCGg -3'
miRNA:   3'- -UCaGCUGCGGCGg--------UGGCGGC---------GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 103544 0.66 0.581616
Target:  5'- uGGUUGAUGaagGCCACCauggcguccgacGCCGUgGCCGa -3'
miRNA:   3'- -UCAGCUGCgg-CGGUGG------------CGGCGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.