miRNA display CGI


Results 41 - 60 of 476 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 149957 0.66 0.581616
Target:  5'- uGUCggGACGUgGCCgACCuGCCGCgGaCCGg -3'
miRNA:   3'- uCAG--CUGCGgCGG-UGG-CGGCGgC-GGC- -5'
11008 5' -65.2 NC_002794.1 + 62770 0.66 0.581616
Target:  5'- --cCGGCuGUuuCGCCGCgCGCCGCCuCCGg -3'
miRNA:   3'- ucaGCUG-CG--GCGGUG-GCGGCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 90499 0.66 0.581616
Target:  5'- --gCGAUcgGCCGUCcCCGCCGCgCGCUu -3'
miRNA:   3'- ucaGCUG--CGGCGGuGGCGGCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 84799 0.66 0.581616
Target:  5'- -cUCGcccacCGUCGCCACCuaCGCCGUCc -3'
miRNA:   3'- ucAGCu----GCGGCGGUGGcgGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 128003 0.66 0.581616
Target:  5'- cGGaCGAcCGUCGUCgGCCGCC-CCGUCGg -3'
miRNA:   3'- -UCaGCU-GCGGCGG-UGGCGGcGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 32501 0.66 0.581616
Target:  5'- -cUCGACGUCuuGCCGgcucCCGCCG-UGCCGg -3'
miRNA:   3'- ucAGCUGCGG--CGGU----GGCGGCgGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 185133 0.66 0.581616
Target:  5'- cAGgCGGCGCCGCgucgagaagAUCGCCGacgcguccuCCGCCGg -3'
miRNA:   3'- -UCaGCUGCGGCGg--------UGGCGGC---------GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 103544 0.66 0.581616
Target:  5'- uGGUUGAUGaagGCCACCauggcguccgacGCCGUgGCCGa -3'
miRNA:   3'- -UCAGCUGCgg-CGGUGG------------CGGCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 71827 0.66 0.581616
Target:  5'- cGUCGcgaggauCGCCGUCcCCGUCGacgggaccucaCCGCCGg -3'
miRNA:   3'- uCAGCu------GCGGCGGuGGCGGC-----------GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 44393 0.66 0.572321
Target:  5'- -cUCGACG-CGCCcguuccggucugACCgGCCGgCGCCGa -3'
miRNA:   3'- ucAGCUGCgGCGG------------UGG-CGGCgGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 44463 0.66 0.572321
Target:  5'- cGUCGGCgGCgGagACCGCC-CCGUCGa -3'
miRNA:   3'- uCAGCUG-CGgCggUGGCGGcGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 110558 0.66 0.572321
Target:  5'- -cUCcGCGUCGUCGCCGUCGUCGaUCGg -3'
miRNA:   3'- ucAGcUGCGGCGGUGGCGGCGGC-GGC- -5'
11008 5' -65.2 NC_002794.1 + 91595 0.66 0.572321
Target:  5'- ---aGugGCCGCUGgUGCgCGCgGCCGa -3'
miRNA:   3'- ucagCugCGGCGGUgGCG-GCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 76456 0.66 0.572321
Target:  5'- --gUGGCGcCCGCCccuCCaCCGuCCGCCGg -3'
miRNA:   3'- ucaGCUGC-GGCGGu--GGcGGC-GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 153274 0.66 0.572321
Target:  5'- aGGUCuACGCCGaC-CCGUCGCCcgagacgcagGCCGg -3'
miRNA:   3'- -UCAGcUGCGGCgGuGGCGGCGG----------CGGC- -5'
11008 5' -65.2 NC_002794.1 + 130278 0.66 0.572321
Target:  5'- cGGUUGA-GCCGCCGCuCGCUcCCGgguCCGg -3'
miRNA:   3'- -UCAGCUgCGGCGGUG-GCGGcGGC---GGC- -5'
11008 5' -65.2 NC_002794.1 + 116235 0.66 0.572321
Target:  5'- gAGUCGAUGC--CCGCCGUgCGCCGUa- -3'
miRNA:   3'- -UCAGCUGCGgcGGUGGCG-GCGGCGgc -5'
11008 5' -65.2 NC_002794.1 + 194976 0.66 0.572321
Target:  5'- cGGcUCGuacaggcacaGCGCCGCgCGCaCGCC-CUGCCGg -3'
miRNA:   3'- -UC-AGC----------UGCGGCG-GUG-GCGGcGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 180897 0.66 0.572321
Target:  5'- -cUCGGCcgcggacucgGCCGCggucuCGCCGgCGCCGUCGg -3'
miRNA:   3'- ucAGCUG----------CGGCG-----GUGGCgGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 72738 0.66 0.572321
Target:  5'- --cCG-CGCUcCCGCgGCgGCCGCCGa -3'
miRNA:   3'- ucaGCuGCGGcGGUGgCGgCGGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.