miRNA display CGI


Results 1 - 20 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 10 0.66 0.601229
Target:  5'- ---aGACGCgGCCGCgaacacgaaaacgagGCCGCCGCgGg -3'
miRNA:   3'- ucagCUGCGgCGGUGg--------------CGGCGGCGgC- -5'
11008 5' -65.2 NC_002794.1 + 60 0.7 0.368797
Target:  5'- cGGcCGACGcCCGCCACCGguaacgaaaCGCCcCCGa -3'
miRNA:   3'- -UCaGCUGC-GGCGGUGGCg--------GCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 300 0.69 0.404775
Target:  5'- cGcCGaACGCCGggcccgccccacccCCACgCGCgCGCCGCCGa -3'
miRNA:   3'- uCaGC-UGCGGC--------------GGUG-GCG-GCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 880 0.66 0.597485
Target:  5'- cGGUCGGCGUgcgcgcgggccgggUGCCAaCGCCGCuccccgCGCCu -3'
miRNA:   3'- -UCAGCUGCG--------------GCGGUgGCGGCG------GCGGc -5'
11008 5' -65.2 NC_002794.1 + 1266 0.68 0.47341
Target:  5'- cAGUguGCGCCaGCCACCgGCCuucuaaggaccgGCCGCUGg -3'
miRNA:   3'- -UCAgcUGCGG-CGGUGG-CGG------------CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 10336 0.67 0.517462
Target:  5'- cGUCGGCGCCGCgACCGggugacggaCUGCuCGaCGg -3'
miRNA:   3'- uCAGCUGCGGCGgUGGC---------GGCG-GCgGC- -5'
11008 5' -65.2 NC_002794.1 + 11076 0.66 0.600293
Target:  5'- uGGU--ACGCCGCCugCcUCGUCGUCGg -3'
miRNA:   3'- -UCAgcUGCGGCGGugGcGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 11798 0.91 0.014528
Target:  5'- uGUCcguGGCGCCGCCGCCGCCGUCGCCGc -3'
miRNA:   3'- uCAG---CUGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 11829 0.66 0.590942
Target:  5'- -uUCGcucccccccuCGCCGCgACCuCCGaCCGCCGg -3'
miRNA:   3'- ucAGCu---------GCGGCGgUGGcGGC-GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 12037 0.66 0.599357
Target:  5'- cGUCcGCGCCuuccccuGCCgguaucucuggGCCG-CGCCGCCGa -3'
miRNA:   3'- uCAGcUGCGG-------CGG-----------UGGCgGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 12175 0.83 0.052415
Target:  5'- cGUCGcCGCCGaCGCCGCCGCgGCCGg -3'
miRNA:   3'- uCAGCuGCGGCgGUGGCGGCGgCGGC- -5'
11008 5' -65.2 NC_002794.1 + 12225 0.75 0.171556
Target:  5'- cGUCGGCGgCGCCGgCGgCGCCGuCCGc -3'
miRNA:   3'- uCAGCUGCgGCGGUgGCgGCGGC-GGC- -5'
11008 5' -65.2 NC_002794.1 + 12744 0.73 0.246643
Target:  5'- cGGUCcGCuaccaggaGCUGCCGCUcuuGCCGCCGCCGc -3'
miRNA:   3'- -UCAGcUG--------CGGCGGUGG---CGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 12905 0.67 0.553842
Target:  5'- -cUCGACuggGCCGagUACCGCCugGCCGUCGa -3'
miRNA:   3'- ucAGCUG---CGGCg-GUGGCGG--CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 13122 0.66 0.571393
Target:  5'- gGGUCGccGCGCgGCuCGCUcgcgcggGUCGUCGCCGu -3'
miRNA:   3'- -UCAGC--UGCGgCG-GUGG-------CGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 13635 0.66 0.569538
Target:  5'- cGUCGGCccguucgaccugcaGCUGUccuggCACgUGCCGCCGCCa -3'
miRNA:   3'- uCAGCUG--------------CGGCG-----GUG-GCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 13859 0.72 0.281163
Target:  5'- cGUCGcCGCCGCCGcgacccgguucuCCGagCGCCGCCc -3'
miRNA:   3'- uCAGCuGCGGCGGU------------GGCg-GCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 13961 0.69 0.42317
Target:  5'- uGUCGA-GCCGCUcggagacguucGCUGCgGCCGCUa -3'
miRNA:   3'- uCAGCUgCGGCGG-----------UGGCGgCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 14157 0.66 0.590942
Target:  5'- cGUCGA-GCC-CCGCCGCCugaaccugcGCCuCCGa -3'
miRNA:   3'- uCAGCUgCGGcGGUGGCGG---------CGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 14649 0.67 0.517462
Target:  5'- ---aGACGCCGgCGCCGCgG-CGUCGg -3'
miRNA:   3'- ucagCUGCGGCgGUGGCGgCgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.