miRNA display CGI


Results 21 - 40 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 14768 0.7 0.347006
Target:  5'- cGUCGAgGCCGCUgagGCCGgCGagGCCGg -3'
miRNA:   3'- uCAGCUgCGGCGG---UGGCgGCggCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16488 0.88 0.022338
Target:  5'- cGcCGccucCGCCGCCACCGCCGCCGCCGu -3'
miRNA:   3'- uCaGCu---GCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16520 0.81 0.072294
Target:  5'- --cCGGCGUCGCCACCGCCGUCcCCGg -3'
miRNA:   3'- ucaGCUGCGGCGGUGGCGGCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 16554 0.89 0.019686
Target:  5'- cGUCGcCaCCGCCACCGCCGCCGCCGc -3'
miRNA:   3'- uCAGCuGcGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16578 0.75 0.179688
Target:  5'- ------nGCCaCCACCGCCGCCGCCGu -3'
miRNA:   3'- ucagcugCGGcGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16601 0.69 0.431323
Target:  5'- --cCGGCGUCGCCACCcCCGUCcCCa -3'
miRNA:   3'- ucaGCUGCGGCGGUGGcGGCGGcGGc -5'
11008 5' -65.2 NC_002794.1 + 16806 0.8 0.077822
Target:  5'- --aCGACGCCcaGCCGCCcCCGCCGCCGc -3'
miRNA:   3'- ucaGCUGCGG--CGGUGGcGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16874 0.72 0.281163
Target:  5'- --cCGcCGCCGCggcagcaacCACCGCCGCCGCg- -3'
miRNA:   3'- ucaGCuGCGGCG---------GUGGCGGCGGCGgc -5'
11008 5' -65.2 NC_002794.1 + 16903 0.66 0.600293
Target:  5'- --nCGACaGCCGCgAuCCGa-GCCGCCGa -3'
miRNA:   3'- ucaGCUG-CGGCGgU-GGCggCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 16933 0.8 0.086666
Target:  5'- cGUCGGCgccgaGCCGCCACCGCCuccccacgcccucucGUCGCCGa -3'
miRNA:   3'- uCAGCUG-----CGGCGGUGGCGG---------------CGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 17212 0.8 0.077822
Target:  5'- --cCGcCGCCGCCACCaCCGCCGCCa -3'
miRNA:   3'- ucaGCuGCGGCGGUGGcGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 17251 0.71 0.318074
Target:  5'- -uUCGACGgcggcgacccggcUCGUCACCcgggcacGCCGCCGCCGa -3'
miRNA:   3'- ucAGCUGC-------------GGCGGUGG-------CGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 17406 0.68 0.482074
Target:  5'- cGcCGAagccacCGCgGCCAUCGCggucuccgCGCCGCCGg -3'
miRNA:   3'- uCaGCU------GCGgCGGUGGCG--------GCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 17465 0.67 0.505841
Target:  5'- aGGUCGAagguucgcuccacaCGCCGCguuugcgauCGCCGaCGCCgGCCGa -3'
miRNA:   3'- -UCAGCU--------------GCGGCG---------GUGGCgGCGG-CGGC- -5'
11008 5' -65.2 NC_002794.1 + 17636 0.83 0.051127
Target:  5'- gAG-CGAuccCGCCGCCGCgGCCGCCGCCa -3'
miRNA:   3'- -UCaGCU---GCGGCGGUGgCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 17665 0.78 0.109386
Target:  5'- -----cCGCCGCCACCGCCGCCgGCCc -3'
miRNA:   3'- ucagcuGCGGCGGUGGCGGCGG-CGGc -5'
11008 5' -65.2 NC_002794.1 + 18036 0.71 0.337853
Target:  5'- --gUGACgGCCGCCACCccgccggaucugcuGCaCGCCGCCu -3'
miRNA:   3'- ucaGCUG-CGGCGGUGG--------------CG-GCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 18665 0.77 0.129357
Target:  5'- --cCGuCGCCGCUuccucgGCUGCCGCCGCCGu -3'
miRNA:   3'- ucaGCuGCGGCGG------UGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 18860 0.68 0.464824
Target:  5'- cGUCGccgauCGCCaacGCCACCGaCGCCGgCGc -3'
miRNA:   3'- uCAGCu----GCGG---CGGUGGCgGCGGCgGC- -5'
11008 5' -65.2 NC_002794.1 + 19302 0.69 0.42317
Target:  5'- cGUCG-CGUCGCUgACCGCCcacGCCGCg- -3'
miRNA:   3'- uCAGCuGCGGCGG-UGGCGG---CGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.