miRNA display CGI


Results 1 - 20 of 476 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11008 5' -65.2 NC_002794.1 + 195569 0.71 0.326152
Target:  5'- --cCGA-GCCGCC-CCGaCCGaCCGCCGg -3'
miRNA:   3'- ucaGCUgCGGCGGuGGC-GGC-GGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 195288 0.67 0.49963
Target:  5'- --cCGAC-CCGCgCACCGCUGCacgcacCGCCGc -3'
miRNA:   3'- ucaGCUGcGGCG-GUGGCGGCG------GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 195028 0.76 0.159975
Target:  5'- aAGUCGcGCGCCGCCAggugcaUCGUCGUCGUCGa -3'
miRNA:   3'- -UCAGC-UGCGGCGGU------GGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 194976 0.66 0.572321
Target:  5'- cGGcUCGuacaggcacaGCGCCGCgCGCaCGCC-CUGCCGg -3'
miRNA:   3'- -UC-AGC----------UGCGGCG-GUG-GCGGcGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 194508 0.68 0.490815
Target:  5'- --cCGGC-CCGCgGcCCGCgUGCCGCCGg -3'
miRNA:   3'- ucaGCUGcGGCGgU-GGCG-GCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 194405 0.77 0.129357
Target:  5'- cGGUCGuucGCGuCCGCCACCGCCGuaaacacgucguCCGCCc -3'
miRNA:   3'- -UCAGC---UGC-GGCGGUGGCGGC------------GGCGGc -5'
11008 5' -65.2 NC_002794.1 + 194268 0.71 0.33995
Target:  5'- --cCGACGCCGCCucGCaCGgCGCgCGCCa -3'
miRNA:   3'- ucaGCUGCGGCGG--UG-GCgGCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 194078 0.78 0.104233
Target:  5'- -uUCGuCGCCGCCACCGCCGUgUGCCc -3'
miRNA:   3'- ucAGCuGCGGCGGUGGCGGCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 194043 0.92 0.012476
Target:  5'- --cCGcCGCCGCCGCCGCCGCCGCCGa -3'
miRNA:   3'- ucaGCuGCGGCGGUGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 194015 0.77 0.132471
Target:  5'- -uUCG-CgGCCGCCGCCGCCGgCGCCu -3'
miRNA:   3'- ucAGCuG-CGGCGGUGGCGGCgGCGGc -5'
11008 5' -65.2 NC_002794.1 + 193975 0.74 0.215709
Target:  5'- nGUCaccgccGCgGCCGCUACCGCCGCCcCCGg -3'
miRNA:   3'- uCAGc-----UG-CGGCGGUGGCGGCGGcGGC- -5'
11008 5' -65.2 NC_002794.1 + 193947 0.8 0.077822
Target:  5'- --cCGGCcccGCCGCCACCGCCGCCaccGCCGu -3'
miRNA:   3'- ucaGCUG---CGGCGGUGGCGGCGG---CGGC- -5'
11008 5' -65.2 NC_002794.1 + 193886 0.78 0.120415
Target:  5'- --gCGuCGCCcuCCACCGCCGCCGCCu -3'
miRNA:   3'- ucaGCuGCGGc-GGUGGCGGCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 193799 0.68 0.490815
Target:  5'- --aCGACGCCGgCGcCCGCuCGUcuggCGCCGa -3'
miRNA:   3'- ucaGCUGCGGCgGU-GGCG-GCG----GCGGC- -5'
11008 5' -65.2 NC_002794.1 + 193757 0.66 0.590942
Target:  5'- gAG-CGAcCGCCgGCC-CCGCuCGCuCGCCc -3'
miRNA:   3'- -UCaGCU-GCGG-CGGuGGCG-GCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 193430 0.67 0.508513
Target:  5'- cGUCGuccaGCCGUC-CgGCaCGCCGCCc -3'
miRNA:   3'- uCAGCug--CGGCGGuGgCG-GCGGCGGc -5'
11008 5' -65.2 NC_002794.1 + 193393 0.82 0.060827
Target:  5'- cGUCGuccgccucGCGCuCGCCuCCGCCGCCGCCGc -3'
miRNA:   3'- uCAGC--------UGCG-GCGGuGGCGGCGGCGGC- -5'
11008 5' -65.2 NC_002794.1 + 193296 0.66 0.600293
Target:  5'- uAGUCGcCGuCCGCUccgcGCCGCaCGCagCGCCc -3'
miRNA:   3'- -UCAGCuGC-GGCGG----UGGCG-GCG--GCGGc -5'
11008 5' -65.2 NC_002794.1 + 192674 0.66 0.563061
Target:  5'- -cUCGaaGCGCCgGCCGCCGUCGUaCGUCu -3'
miRNA:   3'- ucAGC--UGCGG-CGGUGGCGGCG-GCGGc -5'
11008 5' -65.2 NC_002794.1 + 192630 0.74 0.215709
Target:  5'- cAGUCgGGCgGCCGCUccaGCCG-CGCCGCCGc -3'
miRNA:   3'- -UCAG-CUG-CGGCGG---UGGCgGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.