miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11015 5' -56.9 NC_002794.1 + 154288 0.66 0.933615
Target:  5'- --gGCGCGGCuCGACGGucgaaucgagCCUCCUc- -3'
miRNA:   3'- acaUGCGCUG-GCUGCCca--------GGAGGAag -5'
11015 5' -56.9 NC_002794.1 + 53788 0.66 0.933615
Target:  5'- --gACGCGcCCGGCGGGUuUCUCg--- -3'
miRNA:   3'- acaUGCGCuGGCUGCCCA-GGAGgaag -5'
11015 5' -56.9 NC_002794.1 + 190366 0.66 0.933615
Target:  5'- --cGCGCGGCgCaGCGGGUgCUCCc-- -3'
miRNA:   3'- acaUGCGCUG-GcUGCCCAgGAGGaag -5'
11015 5' -56.9 NC_002794.1 + 188370 0.66 0.92864
Target:  5'- --gGCgGCGGCCGAgGGcGUUCUCCc-- -3'
miRNA:   3'- acaUG-CGCUGGCUgCC-CAGGAGGaag -5'
11015 5' -56.9 NC_002794.1 + 30095 0.66 0.925547
Target:  5'- --cGCGCGGCCGGucccgacccaccgccCGGGUuuUCUCCUc- -3'
miRNA:   3'- acaUGCGCUGGCU---------------GCCCA--GGAGGAag -5'
11015 5' -56.9 NC_002794.1 + 75376 0.66 0.923439
Target:  5'- ---cCGCGGCCGGCGGcGgcggCCUCUc-- -3'
miRNA:   3'- acauGCGCUGGCUGCC-Ca---GGAGGaag -5'
11015 5' -56.9 NC_002794.1 + 16308 0.66 0.918013
Target:  5'- cGgcCGCGGCCGGCuGGaUCCcCCUg- -3'
miRNA:   3'- aCauGCGCUGGCUGcCC-AGGaGGAag -5'
11015 5' -56.9 NC_002794.1 + 36356 0.66 0.906489
Target:  5'- cGUGCGCGGCCacCGGGUgCgcgCCcgCg -3'
miRNA:   3'- aCAUGCGCUGGcuGCCCAgGa--GGaaG- -5'
11015 5' -56.9 NC_002794.1 + 41958 0.66 0.906489
Target:  5'- cGUGCGCGGCCuGGaaGGUCggCUCCa-- -3'
miRNA:   3'- aCAUGCGCUGG-CUgcCCAG--GAGGaag -5'
11015 5' -56.9 NC_002794.1 + 91606 0.67 0.900395
Target:  5'- gUGcGCGCGGCCGA-GGGccacgccgaCCUCCUg- -3'
miRNA:   3'- -ACaUGCGCUGGCUgCCCa--------GGAGGAag -5'
11015 5' -56.9 NC_002794.1 + 93037 0.67 0.894081
Target:  5'- gGUGCGCGGCUGcCuGGcCUUCCUg- -3'
miRNA:   3'- aCAUGCGCUGGCuGcCCaGGAGGAag -5'
11015 5' -56.9 NC_002794.1 + 123697 0.67 0.887551
Target:  5'- --gGCGCGACUGGCGGGcgugagcgCgUCgUUCu -3'
miRNA:   3'- acaUGCGCUGGCUGCCCa-------GgAGgAAG- -5'
11015 5' -56.9 NC_002794.1 + 94011 0.67 0.887551
Target:  5'- cGgcgGCG-GGCCGGCGGGUUCcgCCggCg -3'
miRNA:   3'- aCa--UGCgCUGGCUGCCCAGGa-GGaaG- -5'
11015 5' -56.9 NC_002794.1 + 11863 0.67 0.873858
Target:  5'- --gGCGaCGACCgcccgccccgcGACGGGUCCUCg--- -3'
miRNA:   3'- acaUGC-GCUGG-----------CUGCCCAGGAGgaag -5'
11015 5' -56.9 NC_002794.1 + 66890 0.68 0.859351
Target:  5'- ---uCGCGGCCGACucccguucccGGUCCUCCg-- -3'
miRNA:   3'- acauGCGCUGGCUGc---------CCAGGAGGaag -5'
11015 5' -56.9 NC_002794.1 + 157821 0.68 0.84407
Target:  5'- --cGCGCGGuauCCGACGGaGUUgaUCCUUCu -3'
miRNA:   3'- acaUGCGCU---GGCUGCC-CAGg-AGGAAG- -5'
11015 5' -56.9 NC_002794.1 + 65956 0.68 0.836154
Target:  5'- cGU-CGCGAgCGGCGGcGucUCCUCCggCa -3'
miRNA:   3'- aCAuGCGCUgGCUGCC-C--AGGAGGaaG- -5'
11015 5' -56.9 NC_002794.1 + 144981 0.68 0.828063
Target:  5'- gGUGuCGCGACCGGCgccgGGcGUCCgCCUg- -3'
miRNA:   3'- aCAU-GCGCUGGCUG----CC-CAGGaGGAag -5'
11015 5' -56.9 NC_002794.1 + 38216 0.69 0.811386
Target:  5'- --cGCGCGACCGACagauaGGUCCgCCg-- -3'
miRNA:   3'- acaUGCGCUGGCUGc----CCAGGaGGaag -5'
11015 5' -56.9 NC_002794.1 + 180950 0.69 0.802814
Target:  5'- cGUcCGCGGCCGACGcGGa-CUCCgUCg -3'
miRNA:   3'- aCAuGCGCUGGCUGC-CCagGAGGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.